PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 297aa    MW: 32637.8 Da    PI: 5.7189
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-092312642255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  LPERR01G11670.1 231 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 264
                      59*****************************885 PP
2ELK33.21.2e-11184205122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  LPERR01G11670.1 184 ELKEMLLKKYSGCLSRLRSEFL 205
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-213983IPR005540KNOX1
PfamPF037905.4E-214181IPR005540KNOX1
SMARTSM012562.7E-2788139IPR005541KNOX2
PfamPF037911.7E-2492138IPR005541KNOX2
PROSITE profilePS5121310.423184204IPR005539ELK domain
PfamPF037891.4E-8184205IPR005539ELK domain
SMARTSM011883.6E-6184205IPR005539ELK domain
PROSITE profilePS5007112.843204267IPR001356Homeobox domain
SMARTSM003896.6E-14206271IPR001356Homeobox domain
SuperFamilySSF466892.69E-19206273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-27209268IPR009057Homeodomain-like
CDDcd000861.15E-13216268No hitNo description
PfamPF059206.2E-17224263IPR008422Homeobox KN domain
PROSITE patternPS000270242265IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASE ASGVVIGGSS SVAASDLTEL MKAQIAGHPR YPSLLSAYIE  60
CRKVGAPPEV ASLLEEIGRE RRAGAGCCSG EIGVDPELDE FMEAYCRVLV RYKEELSRPF  120
DEAASFLSSI QTQLSNLCSG SSSPAATATH SDEMMGSSDE DQCSGETDML DIGQEQSSRL  180
ADHELKEMLL KKYSGCLSRL RSEFLKKRKK GKLPKDARSA LLEWWNTHYR WPYPTEEDKL  240
RLAARTGLDP KQINNWFINQ RKRHWKPSEG MRFALMEGVA GGSSGTTLYF DTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199208LRSEFLKKRK
2205209KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G11670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
GenBankAK2413120.0AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644109.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP290.0KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D9V0340.0A0A0D9V034_9ORYZ; Uncharacterized protein
STRINGLPERR01G11670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-85KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]