PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11210.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 376aa    MW: 40735.8 Da    PI: 6.7564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11210.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08182224754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + E++RR+r+ ++++ L  l+P++     +K + a++   A+eYI++L
  LPERR01G11210.2 182 KKEKQRRQRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 224
                      57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.249175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-5181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8184248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-7184224No hitNo description
SuperFamilySSF474592.52E-10184248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYHPQCELLM PHESLELDVG QSSSSSHLAA AAMPAELNFH LLHSLDAAAA SHHPTVDYFF  60
GGGGGADQPP PSVMVQPYDQ LVSAAAPHHQ TTMTMLRDYY AGGHYPPAAA TEAYFRGGPR  120
TGSSSLVFGP ADDDNSSAYM VGPFETSSPT PRSGGSRKRS RAAAAAAFFH GGVGPAVNGV  180
EKKEKQRRQR LTEKYNALML LIPNRTKEDR ATVISDAIEY IQELGRTVEE LTLLVEKKRR  240
RREMQGDVVD AAPSAMDQAA ESSEGEVAAA AAAAMVAAAR QQPIRSTYIQ RRSKETFVDV  300
RIVEDDVNIK LTKRRSDGCL AAASRALDDL RLELVHLSGG KIGDCHIYMF NTKIHPRSPV  360
FASAVASRLI EVVDDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G11210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068500.0AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645943.10.0transcription factor TIP2
SwissprotQ5JNS00.0TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A0D9UZX60.0A0A0D9UZX6_9ORYZ; Uncharacterized protein
STRINGLPERR01G11210.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-34bHLH family protein