PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G10700.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 342aa MW: 38524.2 Da PI: 6.2548

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G10700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	44	94	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L+ ++ + LPERR01G10700.1 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQSN 94 56889**************************99999888877765555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-9	37	93	No hit	No description
SMART	SM00338	9.6E-8	42	106	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-8	45	94	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.17E-7	46	96	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-20	119	180	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MADMSPRTDT STDDTDDNHM LEPGQAAIVA ASDSSDRSKD KHEDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQSNNTVFHT GALAFDVEYA RWLEEHNRQI 120 NELRSAVNAH ASDDELRSVV TKIMSHYEEI FKQKGSAAKA DVFHVLSGMW KTPAESIPFL 180 VIEEHAISSY DHYLFADEFT DELDLLKVRK LQLLSTQLEP LTEQQLSGIA NLQQSSQQAE 240 DALSQGMEAL QQSLAETLAG SLGSSGSTGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ 300 QTLQQMQRIL TTRQSARALL VISDYSSRLR ALSSLWLARP KE

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MADMSPRTDT STDDTDDNHM LEPGQAAIVA ASDSSDRSKD KHEDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQSNNTVFHT GALAFDVEYA RWLEEHNRQI  120
NELRSAVNAH ASDDELRSVV TKIMSHYEEI FKQKGSAAKA DVFHVLSGMW KTPAESIPFL  180
VIEEHAISSY DHYLFADEFT DELDLLKVRK LQLLSTQLEP LTEQQLSGIA NLQQSSQQAE  240
DALSQGMEAL QQSLAETLAG SLGSSGSTGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ  300
QTLQQMQRIL TTRQSARALL VISDYSSRLR ALSSLWLARP KE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G10700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051296	1e-180	AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242743	1e-180	AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBank	HM991168	1e-180	HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBank	KM096571	1e-180	KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644064.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Refseq	XP_015688196.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Swissprot	Q0JNL3	0.0	TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBL	A0A0D9UZQ9	0.0	A0A0D9UZQ9_9ORYZ; Uncharacterized protein
STRING	LPERR01G10700.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-108	bZIP family protein

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]