PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G10520.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 485aa MW: 52399.3 Da PI: 7.5014

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G10520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	108	168	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s LPERR01G10520.1 108 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHAS 168 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	105	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	110	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MAAIRPGSRD DPAIKLFGRT IPLLLDPPHA AAEVMNKLGN DVKTNNDIPL VPDKLLIAED 60 TPFCSNNSKK NNLEAIGRQD GRMEIDSLSE DVKTEPDGSI PEKMLKKPDK ILPCPRCNSM 120 ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHASQY RQAMMSSSNT 180 ADSGEVSDVV HNQAITLGSS ALPVTLNENE KATEFRSEVP PCKSSASILE NGEPNNTDLV 240 PLASGDNKEE KSCASSAVVS SCLADNTIVK EPNNRSGCCN GVALPYPAGP PLVLPWSLGW 300 NSVAVMAAAQ CSTQPVLGLK DGIPCPPSWP PQLMVPAPGI CTPVVPIPLV PPPLWSCFPG 360 WPNGMWNSQW PESNNTTVPS PSANKISCSG NNSLVLGKHS REEGLQEEGK TRNNLWVPKT 420 LRIDDPAEAA KSSIWTTLGI KPDVKGIFKS FQSNAPKTGT TPESPQALQA NPAAFSRSQS 480 FQETT

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MAAIRPGSRD DPAIKLFGRT IPLLLDPPHA AAEVMNKLGN DVKTNNDIPL VPDKLLIAED  60
TPFCSNNSKK NNLEAIGRQD GRMEIDSLSE DVKTEPDGSI PEKMLKKPDK ILPCPRCNSM  120
ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHASQY RQAMMSSSNT  180
ADSGEVSDVV HNQAITLGSS ALPVTLNENE KATEFRSEVP PCKSSASILE NGEPNNTDLV  240
PLASGDNKEE KSCASSAVVS SCLADNTIVK EPNNRSGCCN GVALPYPAGP PLVLPWSLGW  300
NSVAVMAAAQ CSTQPVLGLK DGIPCPPSWP PQLMVPAPGI CTPVVPIPLV PPPLWSCFPG  360
WPNGMWNSQW PESNNTTVPS PSANKISCSG NNSLVLGKHS REEGLQEEGK TRNNLWVPKT  420
LRIDDPAEAA KSSIWTTLGI KPDVKGIFKS FQSNAPKTGT TPESPQALQA NPAAFSRSQS  480
FQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G10520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644059.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A0D9UZM7	0.0	A0A0D9UZM7_9ORYZ; Uncharacterized protein
STRING	LPERR01G10520.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-63	cycling DOF factor 2