PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G09720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 544aa MW: 59561.3 Da PI: 4.6425 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.5e-40 | 163 | 222 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s LPERR01G09720.1 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 222 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 160 | 220 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 165 | 221 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 167 | 221 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 169 | 205 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MMCDKDPGIK LFGRVIPRAL EPEAEAAVVD GSDQPPAPAE IEEVEDEDQH KGKEDSNNNE 60 MKVDVPQERE NNEMKVDAPQ EKKGDEMTDD VPQEKENDEM TVDASQSTDT ESTEPVSTST 120 LDQTKEEQSQ VNNAEGKAAS DSKEENEKTE NDESGQDKVL KKPDKILPCP RCNSMDTKFC 180 YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGSR 240 MDISKSVHPE AFASAPSTPI QPIGRNETVL KFGPEVPLCE SMASVLNIKE QNVTNAGAVP 300 TGENRDDNSC ASSITLCNLL PENAVHVDKN GAPVYCNGVG PVPQYYLGAP FMYPWNIGWN 360 NVPMMMPGKS MSESASPPES CSTSSAPWMN SPMMPASRLS APAFPYPLVP PALWGCLSSW 420 PATTWNIPWV RTDGCISPSS SSNSSCSGNG SPLGKHSRDS VPLKEEKEEK SLWVPKTLRI 480 DDPDEAAKSS IWATLGIKPG DPAIFKPFQF KGESKDQTSD SRPARALQAN PAALSRSQSF 540 QETS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G09720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644026.2 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | A0A0D9UZC0 | 0.0 | A0A0D9UZC0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G09720.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-72 | cycling DOF factor 2 |