PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G09720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 544aa    MW: 59561.3 Da    PI: 4.6425
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G09720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.5e-40163222261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  LPERR01G09720.1 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 222
                      7899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31160220IPR003851Zinc finger, Dof-type
PfamPF027013.2E-32165221IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863167221IPR003851Zinc finger, Dof-type
PROSITE patternPS013610169205IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MMCDKDPGIK LFGRVIPRAL EPEAEAAVVD GSDQPPAPAE IEEVEDEDQH KGKEDSNNNE  60
MKVDVPQERE NNEMKVDAPQ EKKGDEMTDD VPQEKENDEM TVDASQSTDT ESTEPVSTST  120
LDQTKEEQSQ VNNAEGKAAS DSKEENEKTE NDESGQDKVL KKPDKILPCP RCNSMDTKFC  180
YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGSR  240
MDISKSVHPE AFASAPSTPI QPIGRNETVL KFGPEVPLCE SMASVLNIKE QNVTNAGAVP  300
TGENRDDNSC ASSITLCNLL PENAVHVDKN GAPVYCNGVG PVPQYYLGAP FMYPWNIGWN  360
NVPMMMPGKS MSESASPPES CSTSSAPWMN SPMMPASRLS APAFPYPLVP PALWGCLSSW  420
PATTWNIPWV RTDGCISPSS SSNSSCSGNG SPLGKHSRDS VPLKEEKEEK SLWVPKTLRI  480
DDPDEAAKSS IWATLGIKPG DPAIFKPFQF KGESKDQTSD SRPARALQAN PAALSRSQSF  540
QETS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G09720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644026.20.0PREDICTED: cyclic dof factor 2-like
TrEMBLA0A0D9UZC00.0A0A0D9UZC0_9ORYZ; Uncharacterized protein
STRINGLPERR01G09720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-72cycling DOF factor 2