PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G09570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 503aa    MW: 55606.6 Da    PI: 4.7256
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G09570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.1e-5191361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGf FhP+d el+++yLkkk++g+++e  ++i+evdiyk+ePwdLp+  +v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++
  LPERR01G09570.1   9 LPPGFGFHPKDTELISHYLKKKIHGQQIEY-DIISEVDIYKHEPWDLPEkcNVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 101
                      79****************************.99***************5346667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +++++g+kktLvf++gr p+g++t+W+mhey +
  LPERR01G09570.1 102 KV-DKRTIGTKKTLVFHEGRPPTGKRTEWIMHEYYI 136
                      **.999****************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-585159IPR003441NAC domain
PROSITE profilePS5100555.2649159IPR003441NAC domain
PfamPF023651.2E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDSLRDIVLP PGFGFHPKDT ELISHYLKKK IHGQQIEYDI ISEVDIYKHE PWDLPEKCNV  60
PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKVDKRTIGT KKTLVFHEGR  120
PPTGKRTEWI MHEYYIDESE CQACPDMKDA FVLCRVTKRS DWVSGNGNVL EDNSNPHLEP  180
NDASPSVIST EQPGPAAALV VGTELNGEAA PVIVAEPPDG VATSAITADT PSPSDGINLD  240
EWLEELFDPS FNPEQGLASA DLSPDEQYVE SSNQGALAPK MEQDYPSPNQ NVADDDTDYL  300
LTEDFYNILY PGTGDFSKLL EPIDEASAYQ TYPGAAGPSN LAKNVENGTQ KEELWLVQDN  360
NEHTESNDAV DNGIVRRYRS GKAPETNETP GTFNYIHKAR LLKTNKMVTG CSESINQTMK  420
FENNSGRLVE HQKNRSHDVT STEWSGEGKP SKDLSSNQGL FRGIRNAFTG CSEAGSNLIL  480
LAVFAVGVAA VALHVGQRLG FRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4621628172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G09570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0D9UZA40.0A0A0D9UZA4_9ORYZ; Uncharacterized protein
STRINGLPERR01G09570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-66NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]