PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G09570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 503aa MW: 55606.6 Da PI: 4.7256 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf FhP+d el+++yLkkk++g+++e ++i+evdiyk+ePwdLp+ +v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++ LPERR01G09570.1 9 LPPGFGFHPKDTELISHYLKKKIHGQQIEY-DIISEVDIYKHEPWDLPEkcNVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 101 79****************************.99***************5346667999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+kktLvf++gr p+g++t+W+mhey + LPERR01G09570.1 102 KV-DKRTIGTKKTLVFHEGRPPTGKRTEWIMHEYYI 136 **.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-58 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.264 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 503 aa Download sequence Send to blast |
MDSLRDIVLP PGFGFHPKDT ELISHYLKKK IHGQQIEYDI ISEVDIYKHE PWDLPEKCNV 60 PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKVDKRTIGT KKTLVFHEGR 120 PPTGKRTEWI MHEYYIDESE CQACPDMKDA FVLCRVTKRS DWVSGNGNVL EDNSNPHLEP 180 NDASPSVIST EQPGPAAALV VGTELNGEAA PVIVAEPPDG VATSAITADT PSPSDGINLD 240 EWLEELFDPS FNPEQGLASA DLSPDEQYVE SSNQGALAPK MEQDYPSPNQ NVADDDTDYL 300 LTEDFYNILY PGTGDFSKLL EPIDEASAYQ TYPGAAGPSN LAKNVENGTQ KEELWLVQDN 360 NEHTESNDAV DNGIVRRYRS GKAPETNETP GTFNYIHKAR LLKTNKMVTG CSESINQTMK 420 FENNSGRLVE HQKNRSHDVT STEWSGEGKP SKDLSSNQGL FRGIRNAFTG CSEAGSNLIL 480 LAVFAVGVAA VALHVGQRLG FRL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-46 | 2 | 162 | 8 | 172 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G09570.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649784.1 | 0.0 | NAC domain-containing protein 74 | ||||
Swissprot | Q7GCL7 | 0.0 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | A0A0D9UZA4 | 0.0 | A0A0D9UZA4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G09570.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G17730.1 | 2e-66 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
---|---|---|---|
|