PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G08530.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 305aa MW: 32579.5 Da PI: 5.8581

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G08530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.4	6.4e-45	12	131	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptd+e++v+yL+kk++g+ +++ ++++diyk+ePwdLp+k+ +e+ew+fFs+rd+ky++g r+nr++ sgyWkatg+dk++l+ LPERR01G08530.1 12 LPPGFRFQPTDQEIIVHYLRKKIAGEATSI---VADFDIYKFEPWDLPAKAVFGEDEWFFFSPRDRKYPNGVRPNRTAGSGYWKATGTDKPILA 102 79**********************9666...99*********87778999*********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWv 122 + + + g+kk Lvfy+gr+p+g+ktdW+ LPERR01G08530.1 103 SnGAHCLGVKKALVFYQGRSPRGTKTDWL 131 8455569*******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-51	5	142	IPR003441	NAC domain
PROSITE profile	PS51005	46.693	12	160	IPR003441	NAC domain
Pfam	PF02365	5.5E-21	13	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEIGFVLGGC RLPPGFRFQP TDQEIIVHYL RKKIAGEATS IVADFDIYKF EPWDLPAKAV 60 FGEDEWFFFS PRDRKYPNGV RPNRTAGSGY WKATGTDKPI LASNGAHCLG VKKALVFYQG 120 RSPRGTKTDW LDDWVLCRVR KKGGALTPET DETSTSISHA AVAPAISYPA GKDTGEQLVQ 180 VPIAASFGVS GGVDDYWSAA DGQLLLMHYL QSGGGGGSGH HAAGSVTGEM PAAGHGESAP 240 HALVPSVLET IKRNLSFQAI DDDVYGLLQP SSKRANCTKG GGGGDEEQLS PATSFTVSEA 300 DELFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	7	142	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	7	142	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	7	142	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	7	142	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	7	142	15	168	NAC domain-containing protein 19
3swm_B	1e-56	7	142	15	168	NAC domain-containing protein 19
3swm_C	1e-56	7	142	15	168	NAC domain-containing protein 19
3swm_D	1e-56	7	142	15	168	NAC domain-containing protein 19
3swp_A	1e-56	7	142	15	168	NAC domain-containing protein 19
3swp_B	1e-56	7	142	15	168	NAC domain-containing protein 19
3swp_C	1e-56	7	142	15	168	NAC domain-containing protein 19
3swp_D	1e-56	7	142	15	168	NAC domain-containing protein 19
4dul_A	1e-56	7	142	12	165	NAC domain-containing protein 19
4dul_B	1e-56	7	142	12	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G08530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200711.1	1e-101	NAC transcription factor 32-like
TrEMBL	A0A0D9UYX4	0.0	A0A0D9UYX4_9ORYZ; Uncharacterized protein
STRING	LPERR01G08530.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-62	NAC domain containing protein 25