PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G08400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 288aa    MW: 30897.8 Da    PI: 6.9542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G08400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93.2e-302510054128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+ew+fFs+rd+ky++g r+nr++ sgyWkatg+dk++l++ + +  g+kk Lvfy+gr+p+g+ktdWvmheyrl
  LPERR01G08400.1  25 GEDEWFFFSPRDRKYPNGVRPNRTAGSGYWKATGTDKPILASnGAHCLGVKKALVFYQGRSPRGNKTDWVMHEYRL 100
                      678*************************************98455569**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.3751128IPR003441NAC domain
SuperFamilySSF1019414.45E-3722128IPR003441NAC domain
PfamPF023658.0E-1527100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTFLAVSLM AGLWRRLGTP KAVFGEDEWF FFSPRDRKYP NGVRPNRTAG SGYWKATGTD  60
KPILASNGAH CLGVKKALVF YQGRSPRGNK TDWVMHEYRL LDIDIIAAHR PNHSMRLDDW  120
VLCRVRKKGG TLTPETDDTS APISHAAVAP AISYPAVKDT GEQLVQVPIA ATFGVSGGVD  180
DYWTTADGLL LMQYLQSGGG GGSGHEAAGS FTGGTPAAGH GESAPHALVP SSVLETIKRN  240
LSFQAIDDDV YGLLQPSKRA NCTRGTGEDE QLSPATSFMV SEADVLFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-452112868168NAC domain-containing protein 19
3swm_B7e-452112868168NAC domain-containing protein 19
3swm_C7e-452112868168NAC domain-containing protein 19
3swm_D7e-452112868168NAC domain-containing protein 19
3swp_A7e-452112868168NAC domain-containing protein 19
3swp_B7e-452112868168NAC domain-containing protein 19
3swp_C7e-452112868168NAC domain-containing protein 19
3swp_D7e-452112868168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G08400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200711.19e-85NAC transcription factor 32-like
TrEMBLA0A0D9UYV50.0A0A0D9UYV5_9ORYZ; Uncharacterized protein
STRINGLPERR01G08400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-50NAC domain containing protein 25