PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G08320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 498aa    MW: 52683.8 Da    PI: 6.3783
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G08320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27204258156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++
  LPERR01G08320.1 204 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 258
                      5689*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.187201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-26202261IPR009057Homeodomain-like
SuperFamilySSF466895.2E-18202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26204258IPR006447Myb domain, plants
PfamPF002492.2E-7207256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLEVSTLRSP KADQHVVGFL PTPPPPTAGV VVNDDDDAFI VDDSLLDYID FTCCDVVPFF  60
HADYVDGDIL PDLEVDPTEL LAEFSSSPED EPPQPASKSP TDEASAGEKK DGVKEDVVAA  120
GDESTAAAHG KKGEEKVDEK NGGGGDEVVS AVTTDDSSAG TGCDGAKSSP SPSAEGHSKR  180
KSSSSSAAAA AAASGKNSHG SKRKVKVDWT PELHRRFVQA VEQLGIDKAV PSRILELMGI  240
ECLTRHNIAS HLQKYRSHRK HLMAREAEAV SWTQKRQMYS TAAVAASVPR KDAPATAAQV  300
TPWPVIPTIG FPPPHAAAAA MAPHPPPFCR PLHPPQLLPV WPRHLAPPPL PAAWAHHQTP  360
MDPASYWQQQ YNAARKWGPQ AVTAATPCIP PPMPPAAMLQ RFPAAPVPGM VPHPMYRPIP  420
PPPLPPHGNK LAALQLQLDA QPSKESIDAA IGDVLVKPWL PLPLGLKPPS LDSVMSELHK  480
QGIPKVPPAA SGGGAAIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-15209260657Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G08320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185821e-150AF318582.1 Oryza sativa putative transcription factor OsGLK2 (Glk2) mRNA, partial cds.
GenBankAK1210191e-150AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence.
GenBankCT8340421e-150CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340441e-150CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-162probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-163GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0D9UYU70.0A0A0D9UYU7_9ORYZ; Uncharacterized protein
STRINGLPERR01G08320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-45GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]