PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G08320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 498aa MW: 52683.8 Da PI: 6.3783 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 204 | 258 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ LPERR01G08320.1 204 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 258 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.187 | 201 | 260 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 202 | 261 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-18 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 204 | 258 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 207 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MLEVSTLRSP KADQHVVGFL PTPPPPTAGV VVNDDDDAFI VDDSLLDYID FTCCDVVPFF 60 HADYVDGDIL PDLEVDPTEL LAEFSSSPED EPPQPASKSP TDEASAGEKK DGVKEDVVAA 120 GDESTAAAHG KKGEEKVDEK NGGGGDEVVS AVTTDDSSAG TGCDGAKSSP SPSAEGHSKR 180 KSSSSSAAAA AAASGKNSHG SKRKVKVDWT PELHRRFVQA VEQLGIDKAV PSRILELMGI 240 ECLTRHNIAS HLQKYRSHRK HLMAREAEAV SWTQKRQMYS TAAVAASVPR KDAPATAAQV 300 TPWPVIPTIG FPPPHAAAAA MAPHPPPFCR PLHPPQLLPV WPRHLAPPPL PAAWAHHQTP 360 MDPASYWQQQ YNAARKWGPQ AVTAATPCIP PPMPPAAMLQ RFPAAPVPGM VPHPMYRPIP 420 PPPLPPHGNK LAALQLQLDA QPSKESIDAA IGDVLVKPWL PLPLGLKPPS LDSVMSELHK 480 QGIPKVPPAA SGGGAAIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-15 | 209 | 260 | 6 | 57 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G08320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF318582 | 1e-150 | AF318582.1 Oryza sativa putative transcription factor OsGLK2 (Glk2) mRNA, partial cds. | |||
GenBank | AK121019 | 1e-150 | AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence. | |||
GenBank | CT834042 | 1e-150 | CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence. | |||
GenBank | CT834044 | 1e-150 | CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615905.1 | 1e-162 | probable transcription factor GLK2 isoform X1 | ||||
Swissprot | Q5NAN5 | 1e-163 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A0D9UYU7 | 0.0 | A0A0D9UYU7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G08320.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-45 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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