PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G08190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 940aa MW: 102758 Da PI: 4.8592 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.1e-19 | 54 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l LPERR01G08190.1 54 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 100 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.8e-15 | 106 | 148 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ LPERR01G08190.1 106 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 148 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-4 | 42 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.404 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-30 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 54 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.72E-15 | 56 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 62 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-14 | 105 | 153 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.654 | 105 | 155 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-13 | 106 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.59E-11 | 108 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 109 | 155 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 940 aa Download sequence Send to blast |
MSSDNGKAPE KGGESSGPPS APQEGGLLDR QGVPPKEIGP LKRWQKVLNP ELVKGPWSKE 60 EDDIIVQMVN KLGPKKWSTI AQALPGRIGK QCRERWHNHL NPGINKEAWT QEEEITLIHA 120 HRMYGNKWAE LTKFLPGRTD NAIKNHWNSS VKKKVDSYMS SGLLSQVSCL PLNEYPAHCN 180 SSPAMTQQNS EDSGCYAVRE VENSSGCSQS SLAKVSCSQV HNANVALGCE LQVHANVDKN 240 EIHDSQSSVG QEACYTSSEL VPSAIPEVHY HASSSNFDPD QHLQEEFAQG LNLHMSIDEV 300 PNDSNFADNQ NICSIENHER SLVPYDVAME MPISMLPSDS GAEQKLHFMS EADFNSPNCL 360 KSELWQDISL QSLLSGPDAV ETDSFSRSNH QTDVYSSKAD TEFLAPSYLL QTSNSSNVME 420 ATYGQCPQMS VSPSFVSSNV MTDAPSDNRP EPKEMRVSQA EVVTESSISS GDAELFANPG 480 SSNDMHVPSM MESIPEGGDQ QVANAAEPEA GIELTQGVTA SDEKQDEGAL FYEPPRFPSL 540 DVPFVSCDLV TSSDLQEYSP LGIRQLMRST MNVCTPMRLW GSPTHDESPD ILLKSAAKSF 600 ICTPSILKKR HRDLLSPIPD KRIEKKSGTE KDRGVSDISS VGIQTGCANA TNDDAVIIKS 660 VLRIERSASS KPLEKKLEFA DEHKETLSYR TEQAKDGQSG GDDKHMDEQT KGEQRSATNT 720 TTTYDNVPGN QPAGILVEHS GDLVSPDYGK SAMNQKRKTN MESLSACKEG LSAKSKPAEL 780 IVEKSSPCIN VDYEYVNILA DTPGIKRGLE SPSAWKSPWF VDMQFQGSYF VSPADRSYDA 840 LGLVKQINVQ TAAALAEARE VLASGGQSDN INSDKENMKN PDAKEPGATK LQTKIMTEGR 900 VLDFNECTTP VRSSERKAGS SLGRSLSSPI PSSHLLRNFR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-52 | 43 | 155 | 47 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-52 | 43 | 155 | 47 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G08190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ430051 | 0.0 | AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878027.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
TrEMBL | A0A0D9UYS9 | 0.0 | A0A0D9UYS9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G08190.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 5e-75 | myb domain protein 3r-4 |