PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07860.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 489aa    MW: 54556.3 Da    PI: 6.8355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07860.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.9e-14157233183
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k++++s+v +  +l lp +f+++h    k  ++ ++lede+g+s++ ++   +++++  l++ W++F+ ++++k+gD+vv  
  LPERR01G07860.4 157 FVKKMLQSHVVRGFWLGLPADFCNKHlP--K-VDTVIVLEDENGNSYDTTY--LGGKQG--LSARWRGFALDHDIKVGDVVVYI 233
                      89*********************99942..3.3468***************..888888..8999****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-14151237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-18152235IPR015300DNA-binding pseudobarrel domain
CDDcd100179.10E-20155231No hitNo description
PROSITE profilePS508639.671157254IPR003340B3 DNA binding domain
SMARTSM010194.9E-12157257IPR003340B3 DNA binding domain
PfamPF023621.0E-11157233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS  60
SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ  120
STDLWNGLTN TIKGCCGSAM ERAKELQTKL PAEQPSFVKK MLQSHVVRGF WLGLPADFCN  180
KHLPKVDTVI VLEDENGNSY DTTYLGGKQG LSARWRGFAL DHDIKVGDVV VYIVREKNLT  240
TTDGVLGLMS LDACKKQKIS KEERSDNAKS GEHPKTTTNS SKGDHNYTQN LVKEGIDGIR  300
FSDSEIIFDD VTSLSNFNII VDGLVIDCKF LDHQRMMYYE LCCSQKSFLH NNLLKHLNFK  360
LVVGVIMETI NIAEGIRACK SDTSSHEDFL VWKKTLQSFE LLGMKVAFLL KRVDDLLGLP  420
AQPRDSSECA KYKEIKLARS RAGVKMKALE SKLSSLTDEL KKMDAEMEEM ESSVRKHDVA  480
LKKIATAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G07860.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699237.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0D9UYM50.0A0A0D9UYM5_9ORYZ; Uncharacterized protein
STRINGLPERR01G07860.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]