PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 264aa    MW: 27845.7 Da    PI: 8.8478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-1386132354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+++P+       K++Ka+ L ++v ++++L
  LPERR01G07000.1  86 KSHSEAERRRRERINAHLATLRTMVPST-----DKMDKAALLAEVVSHVRKL 132
                      58*************************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1375133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1186132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1487133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0010196133No hitNo description
SuperFamilySSF550214.21E-6162232No hitNo description
Gene3DG3DSA:3.30.70.2601.7E-5164228No hitNo description
CDDcd048734.73E-7167231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLLALSVIVL GSWICMSFCL VDRLLPGDEM GSAPFGNAAG ELYEYQGYHG GFAGGAVAAA  60
ASMEMTKKNF GKGGGDRDEK AAMALKSHSE AERRRRERIN AHLATLRTMV PSTDKMDKAA  120
LLAEVVSHVR KLKVAAARVG GGVPSGADEV AVEETTTTNT TNLIRATLSC DDRSDLFADV  180
KLALQPLGLE VVGSEVTTIG GRVRLAFHVS KRDGASADVV ASVRHALQSV LDKASSGFDA  240
FAPRASLLSK RRKVSTFESS TSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G07000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685931e-121AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879685.15e-83transcription factor bHLH30
TrEMBLA0A0D9UYC00.0A0A0D9UYC0_9ORYZ; Uncharacterized protein
STRINGLPERR01G07000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-29bHLH family protein