PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06830.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 589aa    MW: 60345.8 Da    PI: 7.2335
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.1e-35198293284
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssa 82 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +              ++++s++ ++s  +s+
  LPERR01G06830.1 198 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawhptaaaaggnAAPPSSSTHPDSGDNSD 291
                      79**************************************************************777777777766544444444333333333 PP

              TCP  83 sn 84 
                      ++
  LPERR01G06830.1 292 DQ 293
                      32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-31198268IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257200258IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MQHVLIYGIR RGGGGWTRIA AAAAVASPGK KAAGDLDPRH HHRVGDGGGV GGGGGQEEAD  60
DHRLLQLHHH GGGGGEETPP VPVFHLQHLQ AAAAVRQSSS SAEYALLAPM GDSSGGQSHS  120
PLISFGGGIG HHQHHHHYIQ QFTAQATTPQ PAPPNRARGG RAGGEIVPAM TTTRSRGGGG  180
GGGGEIVAVQ GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD VQDRLGYDRP  240
SKAVDWLIKN AKDAIDKLEV LPAWHPTAAA AGGNAAPPSS STHPDSGDNS DDQAQAITVA  300
HTAFDFAGGG GGGGGTSFLP PSLDSDAIAD TIKSFFPMGG TNAGGEASSS TAAANSSAMG  360
FNQSYTHDLL SRTGSQSQEL RLSLQSLPDP IFHHHRSHGG AGAGDGNGTT TQQSLFPAAA  420
NYSFGGGGAM WAEQAAAQNQ RMAVPWNMPD PGGGGSGAAG YLFNVSQQAA HMQEAAAAAM  480
GGHGQSQFFF QRGPLQSSNN QPSSERGWPE SVEAENNQMS HHHHHHQGAG LSPSVSSAAA  540
AAIGFAPGVS FSGFRLPTRI QGDEEHNGGG GNGDKPPPPP SSVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20205258154Putative transcription factor PCF6
5zkt_B2e-20205258154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0D9UY960.0A0A0D9UY96_9ORYZ; Uncharacterized protein
STRINGLPERR01G06830.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-46TCP family protein