PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family BES1
Protein Properties Length: 359aa    MW: 37523 Da    PI: 8.8819
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.49.3e-65231692150
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                       +gr+ptw+ErEnnkrRERrRRaiaaki++GLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg+kp+e+++++g+s s sp+ss+q
  LPERR01G06210.1  23 VGGRMPTWRERENNKRRERRRRAIAAKIFSGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGYKPPERMDVIGCSVSPSPCSSYQ 116
                      689******************************************************************************************* PP

           DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlslvsssl 150
                              +sp++sy+asp+sssfps +s+ ++++ s       + +lp+l++ls++++s+
  LPERR01G06210.1 117 --------PSPRASYNASPTSSSFPSGASSPFLPHPSMtngvdgNPILPWLKTLSNSPASK 169
                      ........9*******************9999999887889999999*****999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-6324163IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MATGGGGGGG GGGMGMAGGG AGVGGRMPTW RERENNKRRE RRRRAIAAKI FSGLRAHGGY  60
KLPKHCDNNE VLKALCNEAG WVVEPDGTTY RKGYKPPERM DVIGCSVSPS PCSSYQPSPR  120
ASYNASPTSS SFPSGASSPF LPHPSMTNGV DGNPILPWLK TLSNSPASKK HPQLPPLLIH  180
GGSISAPVTP PLSSPTARTP RMKTDWDESN VQPPWTGSNS PCVVNSTPPS PGRTMLPDPA  240
WLAGIQISAT SPSSPTFSLV STNPFNVFKD AIPVGNSSSR MCTPGQSGTC SPTIPGMAPH  300
PDIHMMDVVS DEFAFGSSTN GGHQAAGLVR AWEGERIHED SGSDDLELTL GSSRTRAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-222696372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-222696372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-222696372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-222696372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674710.0AK067471.1 Oryza sativa Japonica Group cDNA clone:J013107L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622415.10.0protein BZR1 homolog 2
SwissprotQ0JPT40.0BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A0D9UY130.0A0A0D9UY13_9ORYZ; Uncharacterized protein
STRINGLPERR01G06210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-89BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]