PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family DBB
Protein Properties Length: 362aa    MW: 37793.9 Da    PI: 6.2732
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21e-05444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e  e++  C  ++  lC  C  + H        H +
  LPERR01G06180.1  4 LCSACEAAEARVLCCADDAALCTRCDRNVHAAnrlagkHHR 44
                     7******99*********************55678888554 PP
2zf-B_box26.41.4e-0871111337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  LPERR01G06180.1  71 PPKCDICQECHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 111
                      689*****988*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
SMARTSM003365.5E-8147IPR000315B-box-type zinc finger
CDDcd000217.48E-7347No hitNo description
SMARTSM003368.5E-1469116IPR000315B-box-type zinc finger
PfamPF006431.3E-770103IPR000315B-box-type zinc finger
CDDcd000212.81E-973116No hitNo description
PROSITE profilePS501199.17274116IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD DAALCTRCDR NVHAANRLAG KHHRLPLLSS ASNSNSPSSS  60
SATAASSSPP PPKCDICQEC HAYFFCVEDR ALLCRSCDVA VHTANAFVSA HRRFLLTGVQ  120
VGLDLHDDDE NHPQHPDPPK PPLQQQQQPP PPAPGPAAAS TRKRSPTPLY NDDDDVIDFT  180
ITGNLPDWSL VNDQFTSPAP PPPPPVVVAT TKAAGQPKRS SAAAVFAGLA GGSPDWPLDE  240
FFGFADFNAG GFGGGFTTEN GTSKADSGKI GSMDGSPNGR SSSTTSSAAA GDFFGQVPEV  300
HWAVPELPSP PTASGLHWQG GPRYGVADAG GAVFVPDISS PENPFRCFAG GGGQNMKRRR  360
RG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031052e-60AP003105.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489A05.
GenBankAP0149572e-60AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-60CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696384.11e-138PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 22
TrEMBLA0A0D9UY090.0A0A0D9UY09_9ORYZ; Uncharacterized protein
STRINGLPERR01G06180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-43light-regulated zinc finger protein 1