PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06160.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 302aa    MW: 33907.5 Da    PI: 9.6799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-314594150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  LPERR01G06160.1 45 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 94
                     79***********************************************8 PP
2K-box98.21.2e-321132094100
            K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s++   ++e +a+++qqe++kL+++i++Lq+ ++ ++G++ +++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+
  LPERR01G06160.1 113 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANKTIVGDSFNTMSLRDLKQVETRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 205
                      333.25999************************************************************************************* PP

            K-box  97 klee 100
                      k++e
  LPERR01G06160.1 206 KVAE 209
                      *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1323797IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-423796IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-3338109IPR002100Transcription factor, MADS-box
CDDcd002654.21E-4638111No hitNo description
PRINTSPR004047.4E-333959IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003993IPR002100Transcription factor, MADS-box
PfamPF003191.3E-264693IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-335974IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-337495IPR002100Transcription factor, MADS-box
PfamPF014863.0E-23122207IPR002487Transcription factor, K-box
PROSITE profilePS5129713.463123213IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMNMMTDLSC GPSSVTEMAP APAGSGSSAA AAGSEKMGRG KIEIKRIENT TNRQVTFCKR  60
RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYANNSVKS TVERYKKANS DTSNSGTVAE  120
VNAQHYQQES SKLRQQISSL QNANKTIVGD SFNTMSLRDL KQVETRLEKG IAKIRARKNE  180
LLYAEVEYMQ KREVELQNDN MYLRSKVAEN ERGQQQPLNM MGAASTSEYD HMVNNPYDSR  240
NFLQVNIMQQ PQHYSHQLQP TTLQLGLSPI SLARVCRPTG NGWSIFIQPN GLSFIVKFIW  300
LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2137124191MEF2C
5f28_B2e-2137124191MEF2C
5f28_C2e-2137124191MEF2C
5f28_D2e-2137124191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7509400.0FJ750940.1 Oryza sativa clone KCS254F12 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632498.11e-176MADS-box transcription factor 3 isoform X2
SwissprotQ407041e-164MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0D9UY070.0A0A0D9UY07_9ORYZ; Uncharacterized protein
STRINGLPERR01G06160.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]