PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06020.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 852aa    MW: 92766.3 Da    PI: 6.4095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06020.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-192280357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  LPERR01G06020.3 22 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpvlaNVDPKQIKVWFQNRRCREKQ 80
                     6789*****************************************************97 PP
2START167.87.6e-531723752200
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++l
  LPERR01G06020.3 172 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGtnGTIEL 264
                      6899******************************************************.8888888888******************99***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+
  LPERR01G06020.3 265 LYMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPNmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRP 358
                      *********************************************999999******************************************* PP

                      HHHHHHHHHHHHHHHHT CS
            START 184 lvksglaegaktwvatl 200
                      l++s+++ ++k+ +a  
  LPERR01G06020.3 359 LYESSAMIAQKMSMALY 375
                      ***********999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4021781IPR001356Homeobox domain
SMARTSM003893.7E-151985IPR001356Homeobox domain
SuperFamilySSF466891.24E-162283IPR009057Homeodomain-like
CDDcd000863.84E-162282No hitNo description
PfamPF000462.2E-162280IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-182480IPR009057Homeodomain-like
CDDcd146862.95E-674113No hitNo description
PROSITE profilePS5084824.236162363IPR002913START domain
CDDcd088755.16E-71166385No hitNo description
Gene3DG3DSA:3.30.530.206.2E-22170356IPR023393START-like domain
SMARTSM002341.9E-40171381IPR002913START domain
PfamPF018522.0E-50172374IPR002913START domain
SuperFamilySSF559619.89E-36172365No hitNo description
PfamPF086708.4E-51707851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MVAARESSAA AAREAAMMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPVLA  60
NVDPKQIKVW FQNRRCREKQ RKESSRLQQL NRKLTAMNKL LMEENDRLQK QVSHLVYQNS  120
SNGYFHRATT DTSCDSVVTS GQPPQHNVAA VHPPATAAQQ PRDASPAGLM GIAEETLTEF  180
LSKATGTAVE WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL  240
WLRDCRSMDV VNVLPAGTNG TIELLYMQLY APTTLAPARD FWLLRYTSIL DDGSLVVCER  300
SLSSKQGGPN MPLVQPFIRG EMLPSGFLIR PSDGGGSVIH IVDHMDLEPW SVPEVVRPLY  360
ESSAMIAQKM SMALYKIQAL RYLRQVAHED TRSVITGWGR QPAALRALSQ KLTRGFNEAL  420
NGLADDGWSV IESDGVDDVC ISVNSSKVIG CNATFNNGLP IVSTGVLCAK ASMLLQDVSP  480
PSLLQFLREH RSQWADSNLD AFFASAMKPN FSNLPMSRLG GFSGQVILPL AHTFEPEELL  540
EVIKLGNASN YQDTLVHRDL FLLQMYNGLE ESSAGTCSEL IFAPIDASFS DDSPLLPSGF  600
RIIPIDSPLD TSSPNCTLDL ASTLEAATQR SRIAGVNGAK AVMTIAFQFA FESHLQDSVA  660
AMARQYMRSI ISSVQRIAVA LSSSSRIVPP VAGAAGQLAP ATPEAATLSR WICQSYRFHF  720
GAELIKSADA NSSSESVLKA VWHHSSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM  780
TLEKVFDDQG RKNLCTELPG IMEQGMAYMA GGVCVSSMGK AAAYEKAVAW KVVDDGGGAH  840
CICFMFINWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06020.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D9UXZ00.0A0A0D9UXZ0_9ORYZ; Uncharacterized protein
STRINGLPERR01G06020.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein