PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 831aa    MW: 90576.8 Da    PI: 6.3103
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-19664357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  LPERR01G06020.1  6 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpvlaNVDPKQIKVWFQNRRCREKQ 64
                     6789*****************************************************97 PP
2START172.52.7e-541563632204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++l
  LPERR01G06020.1 156 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGtnGTIEL 248
                      6899******************************************************.8888888888******************99***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+
  LPERR01G06020.1 249 LYMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPNmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRP 342
                      *********************************************999999******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+ +a+l++++
  LPERR01G06020.1 343 LYESSAMIAQKMSMAALRYLR 363
                      *****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.402165IPR001356Homeobox domain
SMARTSM003893.7E-15369IPR001356Homeobox domain
PfamPF000462.1E-16664IPR001356Homeobox domain
CDDcd000863.68E-16666No hitNo description
SuperFamilySSF466891.84E-16767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-18864IPR009057Homeodomain-like
CDDcd146862.86E-65897No hitNo description
PROSITE profilePS5084825.216146365IPR002913START domain
CDDcd088753.67E-73150364No hitNo description
Gene3DG3DSA:3.30.530.202.3E-22154360IPR023393START-like domain
SMARTSM002341.0E-43155365IPR002913START domain
PfamPF018525.9E-52156363IPR002913START domain
SuperFamilySSF559611.79E-36156366No hitNo description
PfamPF086708.0E-51686830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MMDASKYVRY TPEQVEALER LYYECPKPSS LRRQQLVREC PVLANVDPKQ IKVWFQNRRC  60
REKQRKESSR LQQLNRKLTA MNKLLMEEND RLQKQVSHLV YQNSSNGYFH RATTDTSCDS  120
VVTSGQPPQH NVAAVHPPAT AAQQPRDASP AGLMGIAEET LTEFLSKATG TAVEWVQMPG  180
MKPGPDSIGI IAISHGCAGV AARACGLVGM EPAKVAEILK DRPLWLRDCR SMDVVNVLPA  240
GTNGTIELLY MQLYAPTTLA PARDFWLLRY TSILDDGSLV VCERSLSSKQ GGPNMPLVQP  300
FIRGEMLPSG FLIRPSDGGG SVIHIVDHMD LEPWSVPEVV RPLYESSAMI AQKMSMAALR  360
YLRQVAHEDT RSVITGWGRQ PAALRALSQK LTRGFNEALN GLADDGWSVI ESDGVDDVCI  420
SVNSSKVIGC NATFNNGLPI VSTGVLCAKA SMLLQDVSPP SLLQFLREHR SQWADSNLDA  480
FFASAMKPNF SNLPMSRLGG FSGQVILPLA HTFEPEELLE VIKLGNASNY QDTLVHRDLF  540
LLQMYNGLEE SSAGTCSELI FAPIDASFSD DSPLLPSGFR IIPIDSPLDT SSPNCTLDLA  600
STLEAATQRS RIAGVNGAKA VMTIAFQFAF ESHLQDSVAA MARQYMRSII SSVQRIAVAL  660
SSSSRIVPPV AGAAGQLAPA TPEAATLSRW ICQSYRFHFG AELIKSADAN SSSESVLKAV  720
WHHSSAILCC SLKAMPVFTF ANQSGLDMLE TTLVALQDMT LEKVFDDQGR KNLCTELPGI  780
MEQGMAYMAG GVCVSSMGKA AAYEKAVAWK VVDDGGGAHC ICFMFINWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D9UXY90.0A0A0D9UXY9_9ORYZ; Uncharacterized protein
STRINGLPERR01G06020.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein