PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 394aa    MW: 41268 Da    PI: 7.9396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12220265555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f  L+++lP+       K +K +iL +A eY+ksL+
  LPERR01G05820.1 220 HMISERKRREKLNDSFVALKSVLPPG-----SKKDKTSILIRAREYVKSLE 265
                      8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-16217284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-13217269No hitNo description
Gene3DG3DSA:4.10.280.105.6E-13218263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9220265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146869.96E-5256284No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-4264283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MESSSWIHGG YAHANGASNN GFMCGYASSC SPGEFQLKEQ QQQQQLVSSQ IQHHLNQISM  60
HMSMDDDQST VYDGAAMDDL FIPSGSFPSS SSSSASYRST SVSYSADTSP ATAAPHVLGA  120
PAPAAGFIQF PEVSSHAPPY TGFSPPAASG GAFRRYARHL GPRRAVAKSG GGQRMFKTAM  180
SVLSKMHVAA MAYSRQCYYQ QQQAAAAAAE AAPSGNQLQH MISERKRREK LNDSFVALKS  240
VLPPGSKKDK TSILIRAREY VKSLESKLSE LEEKNRELEA RLASTAAPPA AAAATVEKGE  300
EIVEIEVTSA GAGAGAGANG EDQESTCTLN VAVTTPPATS RGGGGGMSTT DVVLRTLQCL  360
REQIGDGASL VAMSTSAGSG GRPPRANLTL QLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228ERKRRE
2224229RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029644e-92AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
GenBankHQ8588704e-92HQ858870.1 Oryza sativa Japonica Group isolate UT1679 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645600.11e-136PREDICTED: uncharacterized protein LOC102700011
TrEMBLA0A0D9UXW60.0A0A0D9UXW6_9ORYZ; Uncharacterized protein
STRINGLPERR01G05820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-17bHLH family protein