PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G05700.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 751aa MW: 84736.8 Da PI: 9.2146 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.7e-09 | 46 | 79 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W+++E ++++a +++G++ Wk++++ +g g+++ LPERR01G05700.5 46 QWSKDELMRFYEAYRRHGKK-WKKVSASVG-GKSAD 79 6*******************.*********.*9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.971 | 42 | 99 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.72E-8 | 42 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-4 | 46 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-8 | 46 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-4 | 47 | 81 | No hit | No description |
SMART | SM01135 | 9.9E-17 | 485 | 572 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.6E-21 | 485 | 551 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MGPAKGSRTI TKITIKGFDD RQHDEDPTSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR 60 RHGKKWKKVS ASVGGKSADA VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS 120 LKESDQMVSA SGKRRKHGQA TGQKEKELPH AHRSYLERRT YGLSSFKKRY YGDLVKNIPR 180 HPSARRTPRV PVIFPADMNV ADAARPEIEN AINYTKKASE VINNELGRSP DGSSGISESA 240 QVVQGQIFLE TKGTGDSQIL GGLKKRRIEQ SMDQYQTIKD EHDTTVAAKE GKDLTDYQNL 300 TGFFSPDEML VLDVLESLVT VPNKISGPKI NIPSGAVEKS DSTFPHRREE GPSKRSKQGK 360 QVGECSASKT RTKRRKKLIA EAVPNHLNLP VEHQVDTTEC ALNSDPERGT LDLPESILNI 420 STEVPDLPSQ MKPEIYMSRR TKRKSKIQCR SNYDICNGAD HLQARRLQHC LSSESLRIWC 480 TYEWFYSAVD YPWFMDNEFV NYLNFAKLSH LSRLTRSEWS TIRSSLGKPR RFSDHFLVAE 540 KEKLEDYREK VIVRHPRTRE LCNGKVVMME HGGYKVQFDR PDLGVDKVKD TDCMPVNWSD 600 NLPNDHKKKS FLSNNSHNGG VEQISKLSSK ENWNHISGEP ESSKILYIPS DEQAEIAVDT 660 EKLSNKSSSG NCGPLQPLQP VDEIHLSDSE YRQQPAKIAG VLERACLMLR PSCSENLPIY 720 NDIENCISVI KNQILALVPT ASSSARLPMY M |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G05700.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064472 | 0.0 | AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619153.1 | 0.0 | protein ALWAYS EARLY 2 isoform X2 | ||||
TrEMBL | A0A0D9UXU8 | 0.0 | A0A0D9UXU8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G05700.3 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 8e-48 | DNA binding |