PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G05530.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 469aa MW: 52244.5 Da PI: 7.4991

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G05530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.7	1.9e-35	92	234	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ LPERR01G05530.1 92 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqK 183 799**********.99**9996775553333333666646******.555666799**************7566666443 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l LPERR01G05530.1 184 GETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 234 3778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-39	87	253	IPR003441	NAC domain
PROSITE profile	PS51005	34.306	92	253	IPR003441	NAC domain
Pfam	PF02365	3.8E-16	93	234	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MYTSPTLLAL SFALLLLFPY LCSLLYSQLA RRTSTHACEN SLPDACESGM NRGHISSSEL 60 IDAKLEERRI STAKHCPSCG NKLDCKPDWV GLPAGVKFDP TDQELIEHLE AKVREEGSRS 120 HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSKHFFHR PSKAYTTGTR KRRKIQTECD 180 VQKGETRWHK TGKTRPVMVN GRQKGCKKIL VLYTNFGKHR KPEKTNWVMH QYHLGDLEEE 240 REGELVVCKI FYQTQPRQCS WSTTTSDRGG AVAATTAPAA QQEQRRRDSG SGSCSSRDHE 300 AVSATSYPAG YAVAAAVEMQ HLKHAGDHFS FAPFRKSFEE VGIGGDQAPS NHLAGRSEQQ 360 HAGQEQQPHR PLLATTTALP ATAFLISRAT NPVSTIVPPA MQHASVVLDH DQFHQQQQQK 420 LDRRSAGLEE LIMGCTSSST KGETSIPHSQ ETEWPYPSYW TPDNQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MYTSPTLLAL SFALLLLFPY LCSLLYSQLA RRTSTHACEN SLPDACESGM NRGHISSSEL  60
IDAKLEERRI STAKHCPSCG NKLDCKPDWV GLPAGVKFDP TDQELIEHLE AKVREEGSRS  120
HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSKHFFHR PSKAYTTGTR KRRKIQTECD  180
VQKGETRWHK TGKTRPVMVN GRQKGCKKIL VLYTNFGKHR KPEKTNWVMH QYHLGDLEEE  240
REGELVVCKI FYQTQPRQCS WSTTTSDRGG AVAATTAPAA QQEQRRRDSG SGSCSSRDHE  300
AVSATSYPAG YAVAAAVEMQ HLKHAGDHFS FAPFRKSFEE VGIGGDQAPS NHLAGRSEQQ  360
HAGQEQQPHR PLLATTTALP ATAFLISRAT NPVSTIVPPA MQHASVVLDH DQFHQQQQQK  420
LDRRSAGLEE LIMGCTSSST KGETSIPHSQ ETEWPYPSYW TPDNQDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-12	90	234	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G05530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU541472	0.0	EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615055.2	0.0	NAC domain-containing protein 75 isoform X3
Refseq	XP_015615071.1	0.0	NAC domain-containing protein 75 isoform X6
Swissprot	Q9M0F8	1e-147	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0D9UXS6	0.0	A0A0D9UXS6_9ORYZ; Uncharacterized protein
STRING	LPERR01G05530.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-119	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]