PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G04660.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 519aa MW: 53713.3 Da PI: 6.0297

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G04660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.4e-31	282	337	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ LPERR01G04660.1 282 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 337 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.87E-17	279	340	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.69	279	339	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-28	280	340	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-26	282	337	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	284	335	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MASSSSDLTL DYKPNGDCGG GGGAYPKQSP AAAAAIAVDH GQATQKLQEF LSRLEEERLK 60 IDAFKRELPL CMQLLNHAME AYRQQLEAYQ MGSQSAAAAR PLVLEEFIPL KNIGIDVTAA 120 AAEKAAAASE KASWMVSAQL WNAPANGAAA AKGPETPKEH SEQQHHPLAV DSSPRLIAAL 180 DAGGGGVGGG AFLPFSKEIN GGAMAGDVGS NAAALPELAL APAEKVDAIA VAGEGEKKPY 240 AHDNNGVAVA RSQNGGKTSS SSAPDGHAVG PPPASAPQTH RKARRCWSPE LHRRFVNALQ 300 ILGGAQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PMAAAPAATA AAPQLVVLGG 360 IWVPPEYATQ AAGPAIYGAH PATPQPHYTA VAAHEYYHHH HHHQSPSAAA AVHHLQHHPA 420 AAALVHHRAV AAAPPPPQPV APAYSSKSPD SDGRGSGGGG GGRDRSESID EEGQGDQERE 480 DDDDDDEMAA ATAANDGAGA DDDDDEINAA TTSAGGINY

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MASSSSDLTL DYKPNGDCGG GGGAYPKQSP AAAAAIAVDH GQATQKLQEF LSRLEEERLK  60
IDAFKRELPL CMQLLNHAME AYRQQLEAYQ MGSQSAAAAR PLVLEEFIPL KNIGIDVTAA  120
AAEKAAAASE KASWMVSAQL WNAPANGAAA AKGPETPKEH SEQQHHPLAV DSSPRLIAAL  180
DAGGGGVGGG AFLPFSKEIN GGAMAGDVGS NAAALPELAL APAEKVDAIA VAGEGEKKPY  240
AHDNNGVAVA RSQNGGKTSS SSAPDGHAVG PPPASAPQTH RKARRCWSPE LHRRFVNALQ  300
ILGGAQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PMAAAPAATA AAPQLVVLGG  360
IWVPPEYATQ AAGPAIYGAH PATPQPHYTA VAAHEYYHHH HHHQSPSAAA AVHHLQHHPA  420
AAALVHHRAV AAAPPPPQPV APAYSSKSPD SDGRGSGGGG GGRDRSESID EEGQGDQERE  480
DDDDDDEMAA ATAANDGAGA DDDDDEINAA TTSAGGINY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-13	282	335	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	282	335	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	282	335	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	282	335	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G04660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109808	1e-122	AK109808.1 Oryza sativa Japonica Group cDNA clone:002-147-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631343.1	1e-160	transcription factor NIGTH1-like isoform X1
Swissprot	Q5VRW2	1e-161	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	A0A0D9UXF7	0.0	A0A0D9UXF7_9ORYZ; Uncharacterized protein
STRING	LPERR01G04660.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9773	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-78	G2-like family protein

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]