PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G03530.8
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-X1
Protein Properties Length: 868aa    MW: 95439.5 Da    PI: 8.2923
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G03530.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.2e-06261278118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C   CH GpCppC
  LPERR01G03530.8 261 CGIHRCPVDCHDGPCPPC 278
                      ****************** PP
2zf-NF-X116.42e-05314333120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CGkH+C++ CH G+C++Cp+
  LPERR01G03530.8 314 CGKHSCERGCHAGKCGECPL 333
                      ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.6105161IPR019787Zinc finger, PHD-finger
SuperFamilySSF578501.73E-5107165No hitNo description
PROSITE patternPS013590108158IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.126108159IPR001841Zinc finger, RING-type
SMARTSM004380.008208226IPR000967Zinc finger, NF-X1-type
PfamPF014220.032209225IPR000967Zinc finger, NF-X1-type
CDDcd060082.07E-8251299No hitNo description
SMARTSM004380.0011261280IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-5261278IPR000967Zinc finger, NF-X1-type
CDDcd060081.75E-7304344No hitNo description
SMARTSM004380.0036314333IPR000967Zinc finger, NF-X1-type
PfamPF014220.043314332IPR000967Zinc finger, NF-X1-type
CDDcd060083.36E-8358407No hitNo description
SMARTSM004380.6368388IPR000967Zinc finger, NF-X1-type
PfamPF014220.019368387IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-4411451No hitNo description
SMARTSM004380.06421440IPR000967Zinc finger, NF-X1-type
PfamPF014220.013421439IPR000967Zinc finger, NF-X1-type
PfamPF014225.3479489IPR000967Zinc finger, NF-X1-type
SMARTSM00438210576620IPR000967Zinc finger, NF-X1-type
PfamPF014220.34576586IPR000967Zinc finger, NF-X1-type
CDDcd060082.11E-4618659No hitNo description
SMARTSM004380.035630648IPR000967Zinc finger, NF-X1-type
PfamPF014225.6630647IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44693714IPR000967Zinc finger, NF-X1-type
PfamPF01422160695707IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MPSSYAAAAS GSPSSSRKPI PVAAASTRQP APSPAAAPAA PSPSNPSGIS DSDPSSYSSS  60
GEETDLTSSD PAAASVVSSY LSVAGDGADL SKVGIFLSSA ARRRSPPCLI CFDPIRPSDP  120
VWSCSASCFA ALHLHCIQSW AHQSASAAPS PTWGCPKCRF PYPKSETPTS YLCFCSKTVD  180
PAPDPWILPH SCGDICGRHL NANRDSGCEH TCLLLCHPGP CPPCPAIVPN ARCFCGSRRE  240
TRRCSHQRYS CLGKCNKRLG CGIHRCPVDC HDGPCPPCAV LGNHKCECGE TMEERLCSER  300
VFQCKRECGG MLECGKHSCE RGCHAGKCGE CPLQGRRTCP CGKKDYPSLD CDAEASTCGS  360
TCEKVLGCGR HKCHERCHRG LCVETCRLVI TKSCRCGCLK KEVPCYQELT CERKCPRMRN  420
CGRHACRRRC CPGDCAPCPE VPCGTEKNQK PPKCSKKCNT ARLCRHKLEC RNRLPQPHKC  480
HYGACPPCKL ICGEELSCGH RCHGPIAPPN PEFTLKPIKR KKEKHIDCTP GTPCPPCQEV  540
VLVPCFGQHL GQERAILCSK KRQFPCQNLC GNPLDCGNHY CTKACHVLQI PLSQPEGDQS  600
AIQSLASASA FAEPCEECDL PCQRVREPSC SHPCPLPCHL DDCPPCKVLV KRPCHCGAMV  660
HAFECMYYNN LNAKEQQKVR SCGGPCHRKL PNCPHLCSEI CHPGQCPSVD QCMKKVNVRC  720
ACNTLKKEWI CQDVLKEYRR SGCDPKQIPK NQYGIGLLAC GEDCMKKVRA AESELHLRKT  780
QEIKSSVVEV ENVPKRKKRR NRGPERVESS KFQEIKAFAL KCLLVIFLFI VVVAGLYLLW  840
KGVYWLSDWM NEMEEQRVRQ RHLKPGRM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1793799PKRKKRR
2795801RKKRRNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G03530.8
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D9UX150.0A0A0D9UX15_9ORYZ; Uncharacterized protein
STRINGLPERR01G03530.40.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors