PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G03530.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-X1 | ||||||||
Protein Properties | Length: 909aa MW: 99908.8 Da PI: 8.3072 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20.2 | 1.3e-06 | 261 | 278 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C CH GpCppC LPERR01G03530.2 261 CGIHRCPVDCHDGPCPPC 278 ****************** PP | |||||||
2 | zf-NF-X1 | 16.4 | 2.1e-05 | 314 | 333 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkH+C++ CH G+C++Cp+ LPERR01G03530.2 314 CGKHSCERGCHAGKCGECPL 333 ******************95 PP | |||||||
3 | zf-NF-X1 | 25.4 | 3e-08 | 448 | 467 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ LPERR01G03530.2 448 CGNHKCASPCHRGACAPCPL 467 ******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50016 | 8.6 | 105 | 161 | IPR019787 | Zinc finger, PHD-finger |
SuperFamily | SSF57850 | 1.84E-5 | 107 | 165 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 108 | 158 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.126 | 108 | 159 | IPR001841 | Zinc finger, RING-type |
SMART | SM00438 | 0.008 | 208 | 226 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.038 | 209 | 225 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.03E-8 | 251 | 299 | No hit | No description |
Pfam | PF01422 | 5.8E-5 | 261 | 278 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0011 | 261 | 280 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.54E-7 | 304 | 344 | No hit | No description |
Pfam | PF01422 | 0.045 | 314 | 332 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0036 | 314 | 333 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.16E-8 | 358 | 407 | No hit | No description |
Pfam | PF01422 | 0.02 | 368 | 387 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.6 | 368 | 388 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.73E-9 | 411 | 459 | No hit | No description |
Pfam | PF01422 | 0.013 | 421 | 439 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.06 | 421 | 440 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.61E-10 | 438 | 486 | No hit | No description |
Pfam | PF01422 | 2.3E-5 | 448 | 466 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.6E-4 | 448 | 467 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6 | 520 | 530 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.36 | 617 | 627 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 210 | 617 | 661 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.9 | 671 | 688 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.035 | 671 | 689 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.44 | 734 | 755 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
MPSSYAAAAS GSPSSSRKPI PVAAASTRQP APSPAAAPAA PSPSNPSGIS DSDPSSYSSS 60 GEETDLTSSD PAAASVVSSY LSVAGDGADL SKVGIFLSSA ARRRSPPCLI CFDPIRPSDP 120 VWSCSASCFA ALHLHCIQSW AHQSASAAPS PTWGCPKCRF PYPKSETPTS YLCFCSKTVD 180 PAPDPWILPH SCGDICGRHL NANRDSGCEH TCLLLCHPGP CPPCPAIVPN ARCFCGSRRE 240 TRRCSHQRYS CLGKCNKRLG CGIHRCPVDC HDGPCPPCAV LGNHKCECGE TMEERLCSER 300 VFQCKRECGG MLECGKHSCE RGCHAGKCGE CPLQGRRTCP CGKKDYPSLD CDAEASTCGS 360 TCEKVLGCGR HKCHERCHRG LCVETCRLVI TKSCRCGCLK KEVPCYQELT CERKCPRMRN 420 CGRHACRRRC CPGDCAPCPE VCDKRLRCGN HKCASPCHRG ACAPCPLMKT ISCNCGQTFF 480 EVPCGTEKNQ KPPKCSKKCN TARLCRHKLE CRNRLPQPHK CHYGACPPCK LICGEELSCG 540 HRCHGPIAPP NPEFTLKPIK RKKEKHIDCT PGTPCPPCQE VVLVPCFGQH LGQERAILCS 600 KKRQFPCQNL CGNPLDCGNH YCTKACHVLQ IPLSQPEGDQ SAIQSLASAS AFAEPCEECD 660 LPCQRVREPS CSHPCPLPCH LDDCPPCKVL VKRPCHCGAM VHAFECMYYN NLNAKEQQKV 720 RSCGGPCHRK LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNTLKKEW ICQDVLKEYR 780 RSGCDPKQIP KNQYGIGLLA CGEDCMKKVR AAESELHLRK TQEIKSSVVE VENVPKRKKR 840 RNRGPERVES SKFQEIKAFA LKCLLVIFLF IVVVAGLYLL WKGVYWLSDW MNEMEEQRVR 900 QRHLKPGRM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 834 | 840 | PKRKKRR |
2 | 836 | 842 | RKKRRNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G03530.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066765 | 0.0 | AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621682.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A0D9UX09 | 0.0 | A0A0D9UX09_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G03530.4 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |