PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G02460.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 360aa MW: 39866.1 Da PI: 9.6828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G02460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.6e-08	31	75	3	46
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 +W++eE +++ +a + l + +W+++ar ++ gR+ ++ ++ + LPERR01G02460.1 31 KWSPEENKQFERALAGLDLRcpDWERVARAIP-GRSVFEVMTHFKD 75 8***************99********.******99986 PP
2	Myb_DNA-binding	47.7	3.5e-15	146	190	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky LPERR01G02460.1 146 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 190 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.909	27	81	IPR017884	SANT domain
SMART	SM00717	0.0049	28	79	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.64E-8	31	84	IPR009057	Homeodomain-like
Pfam	PF00249	6.5E-6	31	76	IPR001005	SANT/Myb domain
CDD	cd00167	7.34E-6	31	76	No hit	No description
PROSITE profile	PS51294	18.359	139	195	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-18	140	195	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-17	142	193	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.1E-12	143	189	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-13	143	193	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-12	146	190	IPR001005	SANT/Myb domain
CDD	cd00167	1.71E-11	146	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMMRDACMEV LPPPIAMDHY ASRGNWLMAR KWSPEENKQF ERALAGLDLR CPDWERVARA 60 IPGRSVFEVM THFKDLEVDV QQIENGLVPF PVYAGGGGGG AFTLQWDHGG VGDLRNAYRF 120 GGGGGGGKRH FGGGRTPEQE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI SRNFVQTRTP 180 TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNLTDDRPP SPSQSSMISN QSNTSTLTAA 240 VAPFSSTADV KPQNAVNSSF NSPSRTLGMP AYGLGLQDQV GFQPKHIVLD ATNPSSTRIR 300 RLVLYCLACS FTTCIEVINY GNFSEHSRGW MDLSVILVTD ALWSIIVGNT ENVTKRTSRT

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMMRDACMEV LPPPIAMDHY ASRGNWLMAR KWSPEENKQF ERALAGLDLR CPDWERVARA  60
IPGRSVFEVM THFKDLEVDV QQIENGLVPF PVYAGGGGGG AFTLQWDHGG VGDLRNAYRF  120
GGGGGGGKRH FGGGRTPEQE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI SRNFVQTRTP  180
TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNLTDDRPP SPSQSSMISN QSNTSTLTAA  240
VAPFSSTADV KPQNAVNSSF NSPSRTLGMP AYGLGLQDQV GFQPKHIVLD ATNPSSTRIR  300
RLVLYCLACS FTTCIEVINY GNFSEHSRGW MDLSVILVTD ALWSIIVGNT ENVTKRTSRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-14	21	98	3	78	RADIALIS
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	GGKRHFGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G02460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067964	0.0	AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence.
GenBank	EU837250	0.0	EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621817.1	1e-173	transcription factor DIVARICATA
Swissprot	Q8S9H7	6e-75	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D9UWL9	0.0	A0A0D9UWL9_9ORYZ; Uncharacterized protein
STRING	LPERR01G02460.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-58	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]