PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G02380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | RAV | ||||||||
Protein Properties | Length: 349aa MW: 37515.5 Da PI: 10.2857 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 60 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g LPERR01G02380.1 60 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFADEEAAARAYDVAALRYRG 108 78****9888.8*********......44*************************98 PP | |||||||
2 | B3 | 92.8 | 2.5e-29 | 175 | 278 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L +gD+ LPERR01G02380.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrrssdaaaaaasPAATSKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKNLAAGDT 268 89****************************9999888877744445999********************************************* PP EEEEE-SSSE CS B3 80 vvFkldgrse 89 +vF+++ LPERR01G02380.1 269 IVFSRSAYGP 278 ****765444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-8 | 60 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-17 | 60 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-20 | 61 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-23 | 61 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.193 | 61 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-12 | 61 | 116 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-38 | 170 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-29 | 172 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-27 | 173 | 274 | No hit | No description |
SMART | SM01019 | 8.1E-22 | 175 | 287 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.408 | 175 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-27 | 175 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGVESVPMSS SSISSGASTA TTVSDGAVHL SPAEETVLPA VTSTAATATA TATAATQQSS 60 RYKGVVPQPN GRWGAQIYER HARVWLGTFA DEEAAARAYD VAALRYRGRD AATNFAGESA 120 SAAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGVG ARAQPTPSWA REPLFEKAVT 180 PSDVGKLNRL VVPKQHAEKH FPLRRSSDAA AAAASPAATS KGVLLNFEDG EGKVWRFRYS 240 YWNSSQSYVL TKGWSRFVRE KNLAAGDTIV FSRSAYGPEK LLFIDCKKTK STAPPPPIEA 300 AQRVVKLFGV DIAGGDCRKR PAEMGKEAFL IKRQCVVHQR APALGALLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-48 | 172 | 287 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G02380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622259.1 | 1e-160 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS0 | 1e-161 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A0D9UWK5 | 0.0 | A0A0D9UWK5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G02380.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-81 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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