PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G01880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 351aa    MW: 37737.9 Da    PI: 4.375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G01880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12120160347
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                      y+GVr +k +g+W+AeIr  +     +  r +lg+f+ta+ A +a+ 
  LPERR01G01880.1 120 YRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAYQ 160
                      9*****99.**********55.....45999*******666666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-13119182IPR001471AP2/ERF domain
PfamPF008471.8E-7119160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18119170IPR001471AP2/ERF domain
PROSITE profilePS5103217.253119178IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-14120168IPR016177DNA-binding domain
PRINTSPR003674.9E-8120131IPR001471AP2/ERF domain
CDDcd000184.57E-14120151No hitNo description
PRINTSPR003674.9E-8142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAPSKQQILL NKVMAKKPKT KRLSGFGLKP SAGFSRPQPP SSPSPAATFA AGLQPRRRVR  60
VVFEDPDATD SDSDDEEDAA GAPKKRYFEL FIGKPPTKLT TPPSTMAAYA AVGKAGCASY  120
RGVRLRKWGK WAAEIRNPFT GHREWLGTFD TADAASAAYQ SASRSFAEEK RRRGQRVASS  180
ASPASSAALT PTASSASSSA SAAPFAHPSP SSVFEATNSA PKPQSPEQAA AAAIPNLDAT  240
NETADLPDDP EFYKDILRGL QLPDIDPMDF RAGLDALDVS DDMPAYMDGE QDFALVTEDM  300
LLGDFAEEDI DLDLDDIDED FVEEFPDIPS GFDLGLGRGM DDLFRQVDFC V
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G01880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643693.11e-138PREDICTED: ethylene-responsive transcription factor ERF036-like
TrEMBLA0A0D9UWE60.0A0A0D9UWE6_9ORYZ; Uncharacterized protein
STRINGLPERR01G01880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.21e-11related to AP2 2