PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G00250.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 312aa MW: 34942.1 Da PI: 6.0964

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G00250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.5	8e-51	5	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+GfrFhPtdeel+ +yL k++++ ++++ vi+evdiyk++Pw+Lp+++ +e ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk++ + LPERR01G00250.1 5 LPAGFRFHPTDEELLLHYLGKRAAAAPCPA-AVIAEVDIYKFNPWELPAMAVFGEAEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPISD 97 799*************************.89***********76667899********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ l g+kk Lvfy+gr pkg+kt+W+mheyrl LPERR01G00250.1 98 AGQMLLGVKKALVFYRGRPPKGTKTSWIMHEYRL 131 9*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-61	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	5	159	IPR003441	NAC domain
Pfam	PF02365	4.9E-25	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEVRLPAGFR FHPTDEELLL HYLGKRAAAA PCPAAVIAEV DIYKFNPWEL PAMAVFGEAE 60 WYFFSPRDRK YPNGARPNRS AGSGYWKATG TDKPISDAGQ MLLGVKKALV FYRGRPPKGT 120 KTSWIMHEYR LAATTAIPAV SSSSSMRLDD LVLCRIYKKA NQQLHYSSPS MDDDDDDQQY 180 AQLPQHQHIK QDESISFRIP RPPSISDYLV DYSAAVSTDQ LFVDNLIPAA ETASLQLGLT 240 PNDDDSSSSR NKRQKMDDYY STSEMTTTLL QTSNHNQRQQ LPASTNCTFI SSMFEPAGQL 300 MPSHSQDDTS II

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-72	2	162	12	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G00250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002818	1e-105	AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBank	AP014957	1e-105	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-105	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645427.1	1e-130	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BNG7	7e-83	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A0D9UVT0	0.0	A0A0D9UVT0_9ORYZ; Uncharacterized protein
STRING	LPERR01G00250.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	6e-75	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]