PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2274820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 262aa    MW: 29045.7 Da    PI: 9.6924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2274820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-0969110240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++ +++++g   +W+ I++++g+gR+  ++
  Lj6g3v2274820.1  69 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVDEI 110
                      69***********************************98765 PP
2Myb_DNA-binding27.95.3e-09206248444
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++
  Lj6g3v2274820.1 206 WSAVQERALVQALKAFPKEasqRWERVAAAVP-GKTVNQCKKKF 248
                      ********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-662111IPR009057Homeodomain-like
PROSITE profilePS500906.89963118IPR017877Myb-like domain
SMARTSM007178.0E-767120IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-869113IPR009057Homeodomain-like
PfamPF002491.1E-769110IPR001005SANT/Myb domain
CDDcd001671.05E-570112No hitNo description
SuperFamilySSF466892.84E-9200251IPR009057Homeodomain-like
PROSITE profilePS512938.604201256IPR017884SANT domain
SMARTSM007172.4E-8202254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-6206251IPR009057Homeodomain-like
PfamPF002492.5E-7206248IPR001005SANT/Myb domain
CDDcd001674.08E-7206252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSLDIEHLRG LCEKMEDRKE LEQAEVIRDA LSCKEGMADV KYEKTIQQNG SIKANGSRGS  60
KSKTEKREKP WSKEEIELLR KGMQKYPKGT SRRWEVISEY IGTGRSVDEI MKATKTVLLQ  120
KPDSSKAFDA FLEKRKPAVS IASPLTTREE VEGAPTNPET GKPENSDASS KKDNLEDSQG  180
KSTDDQNSTA VAANGVSSSS SDQDIWSAVQ ERALVQALKA FPKEASQRWE RVAAAVPGKT  240
VNQCKKKFTA MKESFRNKKG AV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.93830.0floral bud| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2274820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105210.0AP010521.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT39N07, TM1498, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958810.11e-123dnaJ homolog subfamily C member 2
RefseqXP_016197268.11e-123dnaJ homolog subfamily C member 2
RefseqXP_025645640.11e-123dnaJ homolog subfamily C member 2
TrEMBLA0A444ZC281e-122A0A444ZC28_ARAHY; Uncharacterized protein
STRINGXP_007148540.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.12e-86DnaJ domain ;Myb-like DNA-binding domain