PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v2255720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 175aa MW: 20282 Da PI: 8.2551 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.7 | 8.1e-16 | 92 | 138 | 2 | 48 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 + l+++rr++kNRe+A rsR+RK+a++ eLe v Le+eN +L e Lj6g3v2255720.1 92 ATLQKQRRMIKNRESAARSRERKQAYTLELEALVTHLEEENAQLLRE 138 5799*************************************997543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.4E-12 | 91 | 153 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-13 | 92 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 93 | 138 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.75E-17 | 95 | 137 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-10 | 95 | 140 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.3E-14 | 96 | 149 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 98 | 113 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MASSKVDLEQ HCSLSVSGDE IWEDIVGATD QHITLEDFLT KSVPVDTDDA TTHNKNEMYL 60 PQSANGHESA KKLVPHGRGK RRVVEEQPLD KATLQKQRRM IKNRESAARS RERKQAYTLE 120 LEALVTHLEE ENAQLLREEA DKNRLRFKQL MECLIPVVEK RKPRQMLRRV NSVQW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v2255720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148899 | 0.0 | BT148899.1 Lotus japonicus clone JCVI-FLLj-6I8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027355110.1 | 4e-57 | G-box-binding factor 4-like | ||||
TrEMBL | I3T851 | 1e-126 | I3T851_LOTJA; Uncharacterized protein | ||||
STRING | XP_008449422.1 | 4e-48 | (Cucumis melo) | ||||
STRING | XP_004158618.1 | 3e-48 | (Cucumis sativus) | ||||
STRING | GLYMA08G19590.2 | 1e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 1e-36 | bZIP family protein |