PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2218220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CAMTA
Protein Properties Length: 1041aa    MW: 117088 Da    PI: 5.6045
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2218220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.91.5e-56181343118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e ++rwl++ ei++iL n++ +++t+e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  Lj6g3v2218220.1  18 REaQNRWLRPAEICEILRNYRMFDITSEPHNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 111
                      45599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Le+++ +iv+vhylevk
  Lj6g3v2218220.1 112 RRSYWMLEQDMMHIVFVHYLEVK 134
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.83713139IPR005559CG-1 DNA-binding domain
SMARTSM010764.4E-7916134IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-5019133IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.9E-6455543IPR013783Immunoglobulin-like fold
PfamPF018334.7E-5457536IPR002909IPT domain
SuperFamilySSF812961.3E-16457543IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.7E-21624750IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-8634714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.765638759IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-20644749IPR020683Ankyrin repeat-containing domain
CDDcd002041.59E-16644747No hitNo description
SMARTSM002481300655684IPR002110Ankyrin repeat
PROSITE profilePS500889.484655687IPR002110Ankyrin repeat
PROSITE profilePS5008810.873688720IPR002110Ankyrin repeat
SMARTSM002480.0015688717IPR002110Ankyrin repeat
SMARTSM002481900727756IPR002110Ankyrin repeat
SMARTSM000150.27863885IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187864893IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.83E-7865914IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0031866884IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071886908IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413887911IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4889908IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MSEPASYGPR LDLQELQREA QNRWLRPAEI CEILRNYRMF DITSEPHNKP PSGSLFLFDR  60
KVLRYFRKDG HNWRKKKDGK TVKEAHEKLK VGSVDVLHCY YAHGEENENF QRRSYWMLEQ  120
DMMHIVFVHY LEVKGNKSNI GGNTNSDGVI SDSQVNSPSS GFPASYSSVP SLSTEAMSPT  180
SSLTSLREDA DSGDHGQSSI SGTDYIPLFD GDKFRGNDTT YIDGLKGHGI ASWDNVLQCT  240
TELNTDPSLV SFPSILSGSM RNILEQEHNI LDDLLMSKSG PSDEAGSSQS LQSNWQIPFE  300
GNVGHIQALT QSLSSEFGSD YGSGLLRNEA HNGSSEVFSV LSHFHGQPKQ QLMQQNYPEQ  360
HFEGQPQHAL TSDSANRVPG EETINYPLTV RRTLLDRDES LKKVDSFSRW ITKELGEVDD  420
LNMQSSPGIS WSTDECGHVL DDTSLSPSIS QDQLFSINDF SPKWAYAESE IEVLIIGSFL  480
MSQPEVRTSN WSCMFGEVEV HAEVLSNGIL CCQAPHHKVG RVPFYVTCSN RLACSEVREF  540
DYREGFSRKV GIEDFFNSST DMLLHLRLEE LLSLMPVHPP NQTFEGDVEK RNLIFNLISL  600
REEEEFSTKE ELTVEMDISQ QKEHLFCRQV KEKLYSWLLH KVTEGGKGPN VLDNDGQGAL  660
HLAAVLGYDW AITPILTAGV NINFRDVNGW TALHWAASCG RERTVAFLVS MGADSGALTD  720
PSPAFPLGRT AADLASSNGH KGISGFLAES SLTSHLESLT MDDQLKGGRQ EISGMKAVQT  780
VSERTPTPVL YNDMPDALCL KDSLTAVRNA TQAADRIHQV FRMQSFQRKQ LTQTEDGEFD  840
LLDQQALSLL ASKASKSGLG DGLANAAAVQ IQKKFRGWKK RKEFLIIRQR IVKIQAHVRG  900
HQVRKQYKTV IWSVGILEKV ILRWRRKGSG LRGFRPDAVN KVPCLQQNDS QKEDEYDYLK  960
EGRKQSEEKI QKALSRVKSM VQYPEARAQY RRLLNVVDDF RQKKASNMDL IHSEETVDGM  1020
EDLIDIDMLL DDDNFIPIAF D
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2218220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593198.20.0calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLG7INW00.0G7INW0_MEDTR; Calmodulin-binding transcription activator 1
STRINGAES634490.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]