PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v2095710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 107aa MW: 12511.3 Da PI: 10.1706 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eE ++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Lj6g3v2095710.1 14 KGPWTSEENQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.5e-16 | 67 | 107 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rgr+T eE+e +++++ lG++ W++Ia++++ gRt++++k++ Lj6g3v2095710.1 67 RGRFTFEEEETIIQLHSILGNK-WSAIASRLP-GRTDNEIKNY 107 89********************.*********.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.155 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-31 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.71E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 65 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.78 | 66 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-7 | 66 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 67 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-9 | 69 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MGRTPCCEKN GLKKGPWTSE ENQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF TFEEEETIIQ LHSILGNKWS AIASRLPGRT DNEIKNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 107 | 5 | 99 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.26042 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v2095710.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138939 | 1e-180 | BT138939.1 Lotus japonicus clone JCVI-FLLj-21J16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517902.1 | 7e-75 | transcription factor MYB102-like | ||||
Refseq | XP_017435520.1 | 7e-75 | PREDICTED: transcription factor MYB104 | ||||
Refseq | XP_027931556.1 | 6e-75 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 5e-73 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | I3SEP2 | 5e-74 | I3SEP2_LOTJA; Uncharacterized protein | ||||
STRING | XP_007148253.1 | 3e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-75 | MYB-like 102 |
Publications ? help Back to Top | |||
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