PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v2043280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 586aa MW: 65387.2 Da PI: 7.6793 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.5e-08 | 188 | 208 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G+C +G++C+F H Lj6g3v2043280.1 188 RICDFFAK-GWCIRGSSCTFLH 208 79******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.624 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 186 | 208 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 188 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 188 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MGKEKNLGSV SSAAENLEVM APSTNHHMGE NNAMLKASVP SYETPTLKKG EFHPNLEISS 60 QSKSRENLIS AEHGNSQGLD IDVKNAGSLI QGKTLRVCGE PGSNSKAYLY GVEDIDSRTI 120 KSSCDAEKDD VIGLPPSHCF VEDADGDQNS KNKVLQSEME SRIDVKQMTS RRTISLSPRA 180 EIKDGNKRIC DFFAKGWCIR GSSCTFLHIK EVVNNTDREA EVDFVDAHQM KGLSLEEGVK 240 DNVHTSRMNE EEASLSWHRS HENQKFLPRD NLFPENRFAF NASNKYISPN LSSYSSRAEP 300 FVGSSRVSSH SSGYKSKIRS YDWEPSVPFQ PSFFITSMNA SIPRDLYGPV RDRIEILNIG 360 DGSLKATILT EGPASSQVRT YAAVVGKHMS DLNEDKSSVS SHNRFYENEP NKSCVPREKD 420 CLATETEITS GTYENYQNGK IGMGQHTFGV KDVMKPEKGR AEIDTRHHGE GSSHKKRRVE 480 MDKKIHEMDV DFQANGSMQK ETRELRNFRA ALVDLVKELL KPSWHEGRLS KDSHNLIVKK 540 SVDKVISTLE PHQIPTSVDT AKHYVTSCRG KIAKLVTGYV TKYGKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6669 | 9e-67 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v2043280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009668 | 0.0 | AP009668.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT04E21, TM0336, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485809.1 | 0.0 | pinin isoform X2 | ||||
TrEMBL | A0A1S2XCG2 | 0.0 | A0A1S2XCG2_CICAR; pinin isoform X2 | ||||
STRING | XP_004485808.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-31 | C3H family protein |