PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v2017480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 134aa MW: 15362.8 Da PI: 5.6446 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 103 | 2.2e-32 | 56 | 125 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC adls ak yhrrhkvCe+h+kap+vl+s+++qr fhelsefD++krsCrrrLa+hnerrrk+++ Lj6g3v2017480.1 56 CQVEGCYADLSGAKAYHRRHKVCEHHAKAPSVLLSEQQQR-------FHELSEFDDTKRSCRRRLAGHNERRRKNAS 125 ***********************************99886.......7**************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-26 | 49 | 110 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.769 | 53 | 123 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.24E-30 | 54 | 126 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.6E-24 | 56 | 122 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MYKEEDECEE EQEDEEEEEE AVLYGEDGIR KKRVVVTDLY SKRGSKAGGS AVPPSCQVEG 60 CYADLSGAKA YHRRHKVCEH HAKAPSVLLS EQQQRFHELS EFDDTKRSCR RRLAGHNERR 120 RKNASEFQGE GFNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 47 | 122 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v2017480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006076 | 1e-160 | AP006076.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19M07, TM0114, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027338552.1 | 7e-51 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 7e-31 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | I3S8Q2 | 7e-75 | I3S8Q2_LOTJA; Squamosa promoter-binding-like protein | ||||
STRING | GLYMA13G31090.1 | 4e-46 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-30 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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