PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2007290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 859aa    MW: 96801.6 Da    PI: 4.0073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2007290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08461481425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C+ffa+ G+C +G++C+F H
  Lj6g3v2007290.1 461 RRCDFFAK-GWCIRGSSCTFLH 481
                      79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS010318.935115228IPR002068Alpha crystallin/Hsp20 domain
PROSITE profilePS5010314.023457484IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5459481IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-6461481IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MSDPDSPSNA DPFLEEEEEE EEEYEEVEEE EEIEVEEDHQ QEGQEQEANA DDDEAEEQEE  60
IEEEVEVEEE EVEEIEEEVE EEEEEEVEEE EVEVEVEEEQ EEEEELEEEE ELEEEVEEEE  120
EEEEEEVEVE GEEEEEEEEE VEEEQEEEEE LEEEVEEEEE VEVEVEEEEE EEEEEEAAEV  180
EQEGKGAVPN SLLDADIDDK GAVPDSLPEA VVEVKQEDNG AVPDSLPEAI EVKQEINGAV  240
PDSLPEAVEV KQEDDGAVPD SLPDANNDGK GSSQLMGKDK SLGPVSSAAE NLEVMAPSTN  300
HHMEENNAML KAVVPSCETP TLKKEGFHPN LAISSHSKSR ENLISADRGN SHGLDIDVKN  360
AGSLIQGLRV CSEPGSNSKA YLYGVEDIDS MTIKSSCDAE KDDVIGLPPS HYSVEDADGD  420
QNSMNRVLQS EMKSRIDVKQ MTSRRTISLS PSAEIKDGNK RRCDFFAKGW CIRGSSCTFL  480
HIKDVVNNTD REAEVDIVDA HLKRGLKLEE GVKDNVRTSK MNEEKASPSW HRSHENQKFL  540
PRDNLFPESR FAFNASNNYL SPNLSSYSSR AEPFVGSSRV SSHSSGYKSK ISSYDWEPSV  600
PFQPSFFITS MNASIPRDLY GPVRDRIEIP NIGDGSLKAT ILTEKPASSQ VRTYAAVVGK  660
HMSDLNEDKS SVSSHNRFYE NEPNKSCVPR EKDFLATETE ITSGTYENYQ NGKIGMGQHT  720
FGVKDVMEPE KEWAEHDTRH HGEGSSHKKR RVEMDKKIHE MDVDFQANGS MQKETREVRY  780
FRAALVDLVK ELLKPSWHEG RLSKDSHNLI VKKSVDKVIS TLEPHQIPTS VDTAKNYVTS  840
CRGKIAKLVM GYVTKYGKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.66692e-78pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2007290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064100.0AP006410.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT29C05, TM0301a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485809.10.0pinin isoform X2
TrEMBLA0A1S2XCG20.0A0A1S2XCG2_CICAR; pinin isoform X2
STRINGXP_004485808.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-30C3H family protein