PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1950730.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ARF | ||||||||
Protein Properties | Length: 899aa MW: 100201 Da PI: 6.5745 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Lj6g3v1950730.2 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216 99*****************************8544444..48************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Lj6g3v1950730.2 217 EKNQLLLGIRRA 228 99999****997 PP | |||||||
2 | Auxin_resp | 118.9 | 4e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Lj6g3v1950730.2 253 AAHAAATNSRFTIFYNPRASPSEFVIPLVKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-43 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.85E-22 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.5E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-25 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.5E-7 | 756 | 851 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.71E-5 | 762 | 841 | No hit | No description |
PROSITE profile | PS51745 | 21.572 | 766 | 850 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPALGS RVVYFPQGHS EQVAVSTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL VKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD EFGLNSPLLW LRDSDRGMQS LNFQGMGVNP 420 WMQPRFDPSM LNMQTDMYQA VAAAALQDMR SVDPSKQHPS SLLQFQQPQN FPNRTALMQA 480 QMLQQSQPQQ VFQNNQENQQ LLQSQSHLQQ HLQHQHSFNG QTQNHNHNQQ QQQQQQQQTQ 540 QQVVDNQQIC NAGSTMSQFV SAPQPQSSPT QAQSSLSQQQ SFSDSNVNPV TTIVSPLHSL 600 MGSFPQDETS HLLNLSRTSS WVPVQNSTGW PSKRIAVDPL LSSGASVLPQ VEQLGQPQNT 660 ISQNVVTLPP FPGRECSIDQ GSNDPQNHLL FGVNIEPSSL LMHNGISNLK GISSNSDSPT 720 LPYQSSNYLN TTGPDSSLNH GITQSIDESG FLQSPENAGQ GNPQNKTFVK VYKSGSFGRS 780 LDITKFSSYP ELRGELARMF GLEGELEDPV RSGWQLVFVD RESDVLLLGD GPWPEFVNSV 840 WCIKILSPQE MQQMGNTGLE LLNSVPNQRL SNGVCDDYMS RQDPRNLGSG ITTVGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1950730.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363946.1 | 0.0 | auxin response factor 6-like isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A371FH88 | 0.0 | A0A371FH88_MUCPR; Auxin response factor (Fragment) | ||||
STRING | GLYMA15G09750.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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