PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1946420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 415aa MW: 45207.4 Da PI: 7.8657 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.9 | 2e-39 | 41 | 174 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+++WL+++a+ ai el+++++ ++ +++++++++ n++ ++ +ksa Lj6g3v1946420.2 41 SGGKDRHSKVMTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVDWLIKAAEDAISELPSLNNLFPETPqQQSDHENQNLNQNLNSLSKSA 134 689*************************************************************444332222233333333344444444444 PP TCP 95 akskksqksaasalnlak.esrakarararertrekmrik 133 +s++++++ + l+l++ e r kar+rarer ++++ ++ Lj6g3v1946420.2 135 CSSNSETSKGSGGLSLSRcENRVKARERARERAAKEKENE 174 4777777777778******************877776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-37 | 42 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.732 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.766 | 153 | 171 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEEDEIQEQV SKFPRIENGT TFQSSSWHNN SSRIVRVSRA SGGKDRHSKV MTSKGLRDRR 60 VRLSVSTAIQ FYDLQDRLGV DQPSKAVDWL IKAAEDAISE LPSLNNLFPE TPQQQSDHEN 120 QNLNQNLNSL SKSACSSNSE TSKGSGGLSL SRCENRVKAR ERARERAAKE KENESSIAHN 180 VNNNHHHMSQ TASFTELLTG GIGSTVTVPT TTASPTGSVH QTHGGHHQWS STVTPMDYFS 240 SGLLMGHSSS RTHQSSSSSS SSPGFSGQIQ LGHSLPVSPF SGENHSDQMQ RFSFMPEHLM 300 VTSSSCSTQP SGISDYNLNF TISPGLAAGY NRGTLQSNSP SLLPHHHHLQ RFSSSQVDGS 360 SSNNNLPFFM GGAAAAPSTM ENHHHLQFSP LFDGRLQLCY GDGSRNSDQK GKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.10469 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1946420.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009771 | 0.0 | AP009771.1 Lotus japonicus genomic DNA, clone: LjT20A21, TM1936, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518471.1 | 1e-163 | transcription factor TCP2 | ||||
Refseq | XP_014518472.1 | 1e-163 | transcription factor TCP2 | ||||
Refseq | XP_014518473.1 | 1e-163 | transcription factor TCP2 | ||||
Refseq | XP_022642907.1 | 1e-163 | transcription factor TCP2 | ||||
Refseq | XP_022642908.1 | 1e-163 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 3e-87 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A1S3VJD9 | 1e-161 | A0A1S3VJD9_VIGRR; transcription factor TCP2 | ||||
STRING | XP_007147929.1 | 1e-149 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-56 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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