PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1931800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 486aa    MW: 51139 Da    PI: 8.384
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1931800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.8e-125176227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C++++rtG+C +G+rC+F+H++
  Lj6g3v1931800.1 51 DEADCSYYLRTGFCGFGSRCRFNHPR 76
                     6799********************96 PP
2zf-CCCH37.92.9e-1297121327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rtG Ck+G++Ck++H++
  Lj6g3v1931800.1  97 QPVCQYYMRTGSCKFGASCKYHHPR 121
                      689********************96 PP
3zf-CCCH32.51.5e-10142166226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+++ +tG+Ck+ ++CkF+H+
  Lj6g3v1931800.1 142 GEKECSYYVKTGQCKFSATCKFHHP 166
                      7899********************9 PP
4zf-CCCH33.28.6e-11355379327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++C ++a+ G Ck+G+ CkF H++
  Lj6g3v1931800.1 355 APPCTHYAQRGVCKFGPACKFDHPM 379
                      689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5684977IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-65177IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-95176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.83594122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-697122IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5142168IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8142166IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281352380IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5356382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEQYGRSNEG SRSDPSPEWT GPGGETGLEE PMWQLGLGGA ASDESYPQRP DEADCSYYLR  60
TGFCGFGSRC RFNHPRDRGA VIGAARTAGD YPERAGQPVC QYYMRTGSCK FGASCKYHHP  120
RQAGGMASPV SLNYYGYPIR PGEKECSYYV KTGQCKFSAT CKFHHPLPTG VQIQAPPPVP  180
PVSPLPVPVP SPLYQNVQSP SGPSSQQIGV LVARPPLLPG SFVHSPYGPV VVSPTMVPFS  240
GWGPYQASAT SPVLPSSSPS NVGSTQLYGI THLPSSAAAY TGPYQPSGFS VGPSSSSQKQ  300
SFSERPYPPE IQYYSKIGES KLGPSYRYQH QADMNAAPKV NVILSPAGLP LRPGAPPCTH  360
YAQRGVCKFG PACKFDHPMS SMSYSPSASS LTDMPVAPYP VGSSIGTLAP PSSSSELQPG  420
LTTGSNKESV PSRISSSMNT STGSVGLTLS TGEPVSQSST QPSAQSSIPL AAVNSTTSSN  480
VSHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1931800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098540.0AP009854.1 Lotus japonicus genomic DNA, clone: LjT18C07, TM1757a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486037.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-146C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1S2XC790.0A0A1S2XC79_CICAR; zinc finger CCCH domain-containing protein 34-like
STRINGXP_004486037.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-112C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]