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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj6g3v1752890.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
GRAS |
| Protein Properties |
Length: 545aa MW: 60594.2 Da PI: 6.1975 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj6g3v1752890.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 423.1 | 2.3e-129 | 172 | 543 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+++L++cA+avs+gd++ a +++ l +++s +gdp+qRl ay++e+L+arl +s+s +ykal++++ +s+e ++++ ++++v+P+ kf+
Lj6g3v1752890.1 172 KDVLIRCAQAVSDGDMQTALGWMNNvLGKMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPI--TSKELMSYMDILYQVCPYWKFT 263
789**************9999887627888*************************************998..69999999************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
++ N I ea+++e+r+HiiDf+i+qG+QW+ L+qaLasRp+gpp +R+Tgv+++ s+ + l+ +g+rL++fA+++gvpfef+ +a +
Lj6g3v1752890.1 264 YISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDSLSFdaRGGGLHIVGKRLSDFAKSCGVPFEFHS-AAMSG 356
*******************************************************8888888999***********************.89999 PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
++ele+L ++pgEalaVn+++ lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yysa+++s+++ lpr+++
Lj6g3v1752890.1 357 CEVELENLVIRPGEALAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMYESIDVALPRDDK 450
********************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+ E+++++r+ivn++acegaer+erhe ++kWr+r+++aGF p pls++++++++ +l++++++ yr+e+++ +l+l+Wk+r++ ++SaWr
Lj6g3v1752890.1 451 NRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNEN-YRLEHKDVALYLTWKNRAMCTASAWR 543
*****************************************************************55.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 545 aa
Download sequence Send
to blast |
MQASQKHSTS SGVHLYHQPV QDIDAYTHYQ ILQSNSSHGN NNSHGAAASF ETCKENYFTL 60
ESSSPAATDL IGCDSASDAS VSSNYRSPSQ SYHSDQHQSS DNTYGSPSIS AHSSDDGSYK 120
LKHKLRELEI SLLGPDSDAV NSCNCCFKGG PSPIANYNWA QIEEMIPKLD LKDVLIRCAQ 180
AVSDGDMQTA LGWMNNVLGK MVSVAGDPIQ RLGAYMLEGL RARLESSGSL IYKALKCEQP 240
ITSKELMSYM DILYQVCPYW KFTYISSNVV IGEAMQNESR IHIIDFQITQ GTQWLLLIQA 300
LASRPGGPPF IRVTGVDDSL SFDARGGGLH IVGKRLSDFA KSCGVPFEFH SAAMSGCEVE 360
LENLVIRPGE ALAVNFAFFL HHMPDESVST ENHRDRLLRL VKSLSPKVVT LVEQESNTNT 420
SPFFQRFVET LSYYSAMYES IDVALPRDDK NRISAEQHCV ARDIVNMIAC EGAERVERHE 480
LFGKWRSRFS MAGFVPCPLS SSVTASVRNI LNEFNENYRL EHKDVALYLT WKNRAMCTAS 540
AWRCF
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009670 | 0.0 | AP009670.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT16B20, TM0367, complete sequence. |
