PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1722710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 693aa    MW: 80427.1 Da    PI: 6.0139
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1722710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.12.1e-2169160190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v +++  HnHel 
  Lj6g3v1722710.1  69 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPMKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSDVHNHELL 160
                      59********************8888.********************9**********************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1969160IPR004330FAR1 DNA binding domain
PfamPF105517.5E-17292378IPR018289MULE transposase domain
PROSITE profilePS509669.78565600IPR007527Zinc finger, SWIM-type
PfamPF044348.7E-8568596IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-5575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MLSVPSKNIW IRRQQCPCGD WKCYVTHDEV DAEEGSAASE LVNAEKALSG AMITPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRIS PQLGIYKRDF VCYRSGFAPM KKKPNGEHHR  120
DRKSVRCGCD AKMYLSKEVV EGVSQWFVVQ FSDVHNHELL EDDQVRLRPA YRKNHEADQE  180
RILLLSKAGF PIHRIVKMLE LEKGIQGGQL PFLERDVRNF VQNRKKIVQE NEVLLSEKRE  240
NDTLELLEVC KAVKEADDGF VYDFTVDEND KVENIGWSYG DSINANAMFG DVVYFDTTYR  300
SITYGLVFGV WFGIDSYGRT IFFGCVLLQD ETPQSFTWAL QAFIRFMRGR CPQTVLSDLD  360
PGLRDAIRNE FPATKQVIPL SKILNKLPSW YSFPLGPRYA EFRSEFDALF HIENTEEFEL  420
QWSQMVSVYG LGSDKHTDLL YSVRASWAQC YVRGYFLARM ATMSYSKSID AFLKGVFTEQ  480
HTCLRSFFEQ VGISANLQHQ SHQGTQYVHL RTCIPIEEHA QSILTPFAFN CLQQELLLTM  540
QYATSEMANG SYIIRHFKRM EEEWLVMWLD DTEQIHCSCK EFESSGILCR HALRVFVLKN  600
YFQLPDNYYL SRWRRECALL VDDDHNNQST GGEWFQEYHS LAETLFSESS ITRERSHYVR  660
KELTKELTRI LDEVRNLPET DVTSMNMTVS PTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1722710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368876.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A445IVL30.0A0A445IVL3_GLYSO; Uncharacterized protein
TrEMBLI1L0230.0I1L023_SOYBN; Uncharacterized protein
STRINGGLYMA09G01540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]