PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1694980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 267aa    MW: 29224.9 Da    PI: 6.9532
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1694980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.4e-343690155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Lj6g3v1694980.1 36 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 90
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3413393IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-323391IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-243691IPR006447Myb domain, plants
SuperFamilySSF466899.68E-173692IPR009057Homeodomain-like
PfamPF002499.1E-83889IPR001005SANT/Myb domain
PfamPF143793.6E-15134178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MYPRLIHPHE GMIGHDGGGV PNHKGDPCLV LTADPKPRLR WTQDLHERFV DAVTQLGGPS  60
KATPKAIMRT MNVKGLTLFH LKSHLQKYRL GKQSGKDFSE GCKDGISGSY LLESPGSDNP  120
SPKLPTSDTN EGYEIKEALR AQMEVQSKLH LQVEAEKHLQ IRQEAERRYM AMVERACKML  180
ADQFISATVT GTDNQKFQGI GSKAPRGSLV DHPGFYSLPS TEAAGVSVPE EERPHNLPSQ  240
RADCSTESCL TSHESSGGLV LEGSPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.70620.0cell culture| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1694980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1455290.0BT145529.1 Lotus japonicus clone JCVI-FLLj-1B1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486389.11e-175protein PHR1-LIKE 2-like isoform X1
RefseqXP_004486390.11e-175protein PHR1-LIKE 2-like isoform X1
TrEMBLI3SYI11e-179I3SYI1_LOTJA; Uncharacterized protein
STRINGXP_004486388.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.14e-68G2-like family protein