PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1692830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 681aa MW: 78077.1 Da PI: 6.8818 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.7 | 1.5e-21 | 74 | 157 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF vr+++s +++++e + + ++Cs +g++++++ + + r+etrtgC a+++++ ++++w+++++ leHnH l Lj6g3v1692830.1 74 NYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRTKDVN-----HLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHIL 157 5899**************************************99988.....999********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.9E-19 | 74 | 157 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-29 | 276 | 369 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.8E-4 | 551 | 595 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.606 | 563 | 599 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.0E-6 | 574 | 601 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MVKLGSIQQT TFGEMEETSL CCEDLPHGEC IEVHKDEDAA LIELDSQNGF SEGRKEFDAP 60 AVGMEFESYD DAYNYYICYA KEVGFCVRVK NSWFKRNSRE KYGAVLCCSS QGFKRTKDVN 120 HLRKETRTGC PAMMRIRIAE SQRWRIIEVI LEHNHILGAK IHKSAKKMGN GTKRKSLPSS 180 DSEVQTVKLY RPLVIDAGGN GNLNPSARDD RTFSEMSNKL NVKRGDTQAI YNFLCRMQLT 240 NPNFFYLMDF DDEGHLRNAF WADARSRAAC GYFGDVIYFD NTYLSSKYEI PLVVFVGINH 300 HGQSVLLGCG LLAGETTESY IWLFRTWVTC MSGCSPQTII TDRCEALQSA IIEVFPKSHH 360 CFGLSLIMKK VPEKLGGLHN YDGIRKALIK AVYETLKISE FEAAWGIMIQ RFGVSDHEWL 420 RSLYEDRVRW APVFLKDVFF GGMSAARPGE SIGPFFGRYV HKQTPLKEFL DKYELALHKK 480 HKEESLADTE SRNSSPVLKT RCSLELQLSR MYTREIFMKF QFEVEEMFSC FGTTQLHVDG 540 PIVIYLVKER VLIDGNRREI KDFEVVYSRA AGELRCICSC FNFYGYLCRH ALCVLNFNGV 600 EEIPFKYILS RWKKDYKRLH VPDHSSVSAD DTDPIQWSNQ LFSSALQVVE EGTISLDHYN 660 VALQACEESL SKVHDVDQRQ D |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1692830.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004908 | 0.0 | AP004908.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT12N11, TM0066, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128340.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6, partial | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A151T6B6 | 0.0 | A0A151T6B6_CAJCA; Protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | GLYMA15G13150.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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