PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v1692720.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 705aa MW: 81451.9 Da PI: 6.5799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v1692720.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.3e-22	98	182	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAke+GF +r+++s ++++++e + ++C++eg+r+ ++ + ++r+etrtgC a++++++ ++++w++++++leHnH++ Lj6g3v1692720.1 98 NYYNSYAKETGFGIRVKSSWTKRHSKEKRGAVLCCNCEGFRTIKEAN-----SHRKETRTGCLAMIRLRLVESNRWKLDEVKLEHNHSFD 182 69**************************************99888.....999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-19	98	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-29	303	393	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.804	589	625	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.7E-6	600	627	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MTNGTGCSPN DKGLSLSPNL EITIDEESPN SEQLLEIEDE GNRLETSCGQ LFEIDGSKHE 60 NGRYETTIVD SNSGESQGKE YPPPVVGMEF DTYDDAYNYY NSYAKETGFG IRVKSSWTKR 120 HSKEKRGAVL CCNCEGFRTI KEANSHRKET RTGCLAMIRL RLVESNRWKL DEVKLEHNHS 180 FDPERAQNSK SHKRVESGAK RKVEPTLDVE VRTIKLYRMP VVDTSGYGSS NSNEGRGSNT 240 INFSRRLKLK KGDAELISNY FCRSQLKNPN FFYVMDLNDD GQLRNIFWID SRSRAAYSYF 300 GDVIAFDSTY LSNNYEIPLV AFVGVNHHGQ SFLLGCGLLA DEAFETYIWL FRAWLTCMSG 360 RPPQTIITNQ CKTMQSAIAE VFPRAHHRIS LSQVIQSILG CLVQFQEYEV FQMALTKVIY 420 DPKTVDEFER AWDDLTQRFG IRNHEKLQTL HDEREHWAPI YSKDTFFAGI SDYEKGECVI 480 PFFKGHVHQQ TTLKDFFEIY ELVLQKKQKT EALDDLESQS SSPLLKTRCY YELQLSKLYT 540 NAIFRKFQDE VLMMPTCFNV SEIQTNGSAV TYMVTEHEGL ESSSHARHFE VMYDKAGAEV 600 RCICSCFNFK GYLCRHALYI LNYNGVEEIP CQYILSRWRK DFKRLYVPHL SSNNVDISNP 660 VQCFDHLYKR AMQIVEEGMI SRDHYMASWQ AFRESLNKIR LVADR

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MTNGTGCSPN DKGLSLSPNL EITIDEESPN SEQLLEIEDE GNRLETSCGQ LFEIDGSKHE  60
NGRYETTIVD SNSGESQGKE YPPPVVGMEF DTYDDAYNYY NSYAKETGFG IRVKSSWTKR  120
HSKEKRGAVL CCNCEGFRTI KEANSHRKET RTGCLAMIRL RLVESNRWKL DEVKLEHNHS  180
FDPERAQNSK SHKRVESGAK RKVEPTLDVE VRTIKLYRMP VVDTSGYGSS NSNEGRGSNT  240
INFSRRLKLK KGDAELISNY FCRSQLKNPN FFYVMDLNDD GQLRNIFWID SRSRAAYSYF  300
GDVIAFDSTY LSNNYEIPLV AFVGVNHHGQ SFLLGCGLLA DEAFETYIWL FRAWLTCMSG  360
RPPQTIITNQ CKTMQSAIAE VFPRAHHRIS LSQVIQSILG CLVQFQEYEV FQMALTKVIY  420
DPKTVDEFER AWDDLTQRFG IRNHEKLQTL HDEREHWAPI YSKDTFFAGI SDYEKGECVI  480
PFFKGHVHQQ TTLKDFFEIY ELVLQKKQKT EALDDLESQS SSPLLKTRCY YELQLSKLYT  540
NAIFRKFQDE VLMMPTCFNV SEIQTNGSAV TYMVTEHEGL ESSSHARHFE VMYDKAGAEV  600
RCICSCFNFK GYLCRHALYI LNYNGVEEIP CQYILSRWRK DFKRLYVPHL SSNNVDISNP  660
VQCFDHLYKR AMQIVEEGMI SRDHYMASWQ AFRESLNKIR LVADR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v1692720.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004908	0.0	AP004908.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT12N11, TM0066, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147532.1	0.0	hypothetical protein PHAVU_006G132500g
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A445GSQ3	0.0	A0A445GSQ3_GLYSO; Protein FAR1-RELATED SEQUENCE 8 isoform A
TrEMBL	I1MFY4	0.0	I1MFY4_SOYBN; Uncharacterized protein
STRING	GLYMA15G13160.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]