PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1689520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 89aa MW: 10118.9 Da PI: 8.9076 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74.6 | 1.9e-23 | 14 | 60 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l+ Lj6g3v1689520.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQ 60 7********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.68 | 13 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-22 | 14 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MKEGSGRKQG AAPPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHRVF GASNVNKMLQ 60 VIYFLLSFIL PNCPYTHYPT CRIWVTFDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 10 | 62 | 7 | 59 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 10 | 62 | 7 | 59 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1689520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090716 | 2e-62 | BT090716.1 Soybean clone JCVI-FLGm-5M9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535054.1 | 3e-35 | LOB domain-containing protein 4 | ||||
Refseq | XP_003547318.1 | 2e-35 | LOB domain-containing protein 4 | ||||
Refseq | XP_014518102.1 | 2e-35 | LOB domain-containing protein 4 | ||||
Refseq | XP_017435904.1 | 2e-35 | PREDICTED: LOB domain-containing protein 4-like | ||||
Refseq | XP_028180280.1 | 3e-35 | LOB domain-containing protein 4-like | ||||
Refseq | XP_028203361.1 | 2e-35 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-33 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0B2QS87 | 6e-34 | A0A0B2QS87_GLYSO; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0L9VDQ5 | 5e-34 | A0A0L9VDQ5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VIR3 | 5e-34 | A0A1S3VIR3_VIGRR; LOB domain-containing protein 4 | ||||
TrEMBL | A0A445GSR2 | 6e-34 | A0A445GSR2_GLYSO; LOB domain-containing protein 4 | ||||
TrEMBL | I1L0C8 | 6e-34 | I1L0C8_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1MG13 | 6e-34 | I1MG13_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02510.1 | 1e-34 | (Glycine max) | ||||
STRING | GLYMA15G13410.1 | 1e-34 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-35 | LOB domain-containing protein 4 |