PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1654310.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 488aa    MW: 53947.4 Da    PI: 7.6408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1654310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-191775357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lj6g3v1654310.1 17 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                     6789*****************************************************97 PP
2START173.41.4e-541653722204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++++ e+l d++  W ++++  ++l  + +g  g+++l
  Lj6g3v1654310.1 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRM-SWYRDCRCLDVLSIVPTGsgGTIEL 257
                      68999*****************************************************6666666666.************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      m+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S+++ +  p+    s++ Rae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+
  Lj6g3v1654310.1 258 MYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTNSTGGPTgppPSNFTRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRP 351
                      ****************************************99999888899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+ + ++k++ a+lq+ +
  Lj6g3v1654310.1 352 LYESSKILAQKMTIAALQHIR 372
                      ******************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-19775IPR009057Homeodomain-like
PROSITE profilePS5007115.7421276IPR001356Homeobox domain
SMARTSM003898.6E-161480IPR001356Homeobox domain
SuperFamilySSF466894.28E-171780IPR009057Homeodomain-like
CDDcd000868.12E-171777No hitNo description
PfamPF000461.5E-161775IPR001356Homeobox domain
CDDcd146861.11E-569108No hitNo description
PROSITE profilePS5084824.579155356IPR002913START domain
CDDcd088751.55E-72159375No hitNo description
Gene3DG3DSA:3.30.530.207.3E-22163368IPR023393START-like domain
SMARTSM002341.2E-50164374IPR002913START domain
PfamPF018523.9E-52165372IPR002913START domain
SuperFamilySSF559613.16E-37165376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MALSMHKDSS NSMDSSKYVR YTPEQVEALE RVYAECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLTTVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGYMKQQ  120
IHTASAATTT DNSCESVVVS GQNQQQNPSQ HSQRDANNPA GLLAIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGIA ARACGLVSLE PTKVAEILKD RMSWYRDCRC  240
LDVLSIVPTG SGGTIELMYM QTYAPTTLAA ARDFWTLRYT TTLEDGSLVI CERSLTNSTG  300
GPTGPPPSNF TRAEMLPSGY LIRPCEGGGS IIHIVDHIDL DVWSVPEVLR PLYESSKILA  360
QKMTIAALQH IRQIAQESSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSMLG  420
HDGAEDVTIT VNSTPNKFLG SNYNSSMFPA FGGGVLCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADYGV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1654310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486450.10.0homeobox-leucine zipper protein ATHB-14
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S2XD510.0A0A1S2XD51_CICAR; homeobox-leucine zipper protein ATHB-14
STRINGXP_004486450.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]