PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1589790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 466aa MW: 51297.4 Da PI: 6.613 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.7e-31 | 238 | 296 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Lj6g3v1589790.1 238 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 296 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.925 | 232 | 298 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.5E-31 | 232 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 235 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 237 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 239 | 296 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MCSIFVSTMD NNYQFGDLTD ILRASGGTSS SPEPPAPPQP PHHHQNHWHQ HQNQHQLQHQ 60 FSSDPMIFNN FGDPFSTFRD PLLLQDLDIP SVSSYFNTST TDSGGLEQAV VAASGFGGVI 120 SGNSATNNTN VSASSVFAHK VVEDNHDMMR RPCKNIFSNM IQISPNCNAK LPGSYDSSST 180 SSPAPRPIKP SAVISPNINI NAPRNPGLKR RKNQAKKVVC IPAPAAANSR QTGEVVPSDL 240 WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT SEHNHPWPTQ 300 RNALAGSTRS QPSKSNNAAS KSSEIFDSQK GTLTKPKEEH EQESNSEGNN SPGVAAGNSS 360 NSVKEEMEDM EMKQLENMED GEFSDGIGIP YKPSMIGSNN QQSEDFFAEL GEIEADPLNL 420 LFTQGFGHAP DEHQRESTKA IDPFHIFDWS NTTNTNSFDE PNKRRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-25 | 212 | 299 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-25 | 212 | 299 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1589790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 6e-64 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339111.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | V7BN46 | 0.0 | V7BN46_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147420.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 2e-83 | WRKY DNA-binding protein 14 |