PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1559270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | CAMTA | ||||||||
Protein Properties | Length: 907aa MW: 102956 Da PI: 7.5181 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 158.8 | 1.1e-49 | 31 | 146 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 + k+rwl+++ei++iL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f r Lj6g3v1559270.1 31 EAKSRWLRPNEIHSILCNHKYFTIYVKPVRLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVR 124 459******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++ le+ivl hy+e++ Lj6g3v1559270.1 125 RCYWLLDKILEHIVLFHYRETQ 146 *******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.815 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.0E-72 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.1E-44 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 7.7E-5 | 335 | 440 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.87E-15 | 351 | 438 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.9E-4 | 352 | 437 | IPR002909 | IPT domain |
CDD | cd00204 | 4.55E-15 | 528 | 647 | No hit | No description |
Pfam | PF12796 | 4.1E-7 | 529 | 617 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.7E-15 | 546 | 650 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-17 | 547 | 650 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.3 | 555 | 620 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.0E-5 | 588 | 617 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.194 | 588 | 620 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2100 | 627 | 658 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 28 | 752 | 774 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.852 | 753 | 779 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.18 | 755 | 773 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.17 | 775 | 797 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.883 | 776 | 800 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 777 | 797 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 19 | 855 | 877 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.876 | 857 | 885 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MAHTLTGQLV GSEIHGFHTL QDLDVENTLE EAKSRWLRPN EIHSILCNHK YFTIYVKPVR 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 SFVRRCYWLL DKILEHIVLF HYRETQESQG SPATPVNSTS SSASGPTGPL ILSEDLDSGT 180 NNAYTEGLND NLTTESHDLR LHEINTLEWD DLLVPNANTS NVPNGGNELY LYQQNQTSPN 240 DSFGNVASNP SAEIPSFGNL TQPISGSNNV PYNFPESVNL QSNCPISSGG VGSIGTVVDE 300 GLQKQDSFGT WINNIISDTP CSVDGSALVS SISSSVVVDN QPSYLPEQVF NLTEVSPTWA 360 SSTEKTKVLV TGFFHNDYQH LTKSNLLCVC GDVSVPLEFV QVGVYRCWVS PHSPGFVNLY 420 MSLDSQKPIS QVVNFEYRTP ILHDPASSME QKYNWNEFRL QTRLAHLLFT TKRRLDAFSS 480 KVSPNALKEA RKFADKTSFV TKYWQNLMKS VDDNTAPFPQ AKDDLFEIAL KNKLKEWLLE 540 RIVLGCCKTT EYDSQGQGVI HLCAVLGYTW AVSLFSWSGL SLDFRDKFGW TALHWAAYYG 600 MEKMVAVLLS YGARPNLVTD PTPQNPGGCT AADLAYMKGY DGLAAYLSEK SLVEQFNDMS 660 LAGNISGSLE TTSTTDPVNP ENLTEDQLYI KDTLAAYRTA AEAAARIQVA FRHRSLKLRS 720 QAVEFLSPEE EARQIVAAMK IQHAFRNFET RKMMAAAARI QYRFRTWKMR KDFLLMRRQA 780 IRIQSAFRAF QARRQYHKIM WSVGVLEKAI LRWRLKRKGF RGLQVNLDEE MKDEKQESDV 840 EEEFFRTGRK QAEERVERSV VRVQAMFRSK KAQKEYSRMK MAHSQVKLEL ELEEFLNSEV 900 DMSSSKI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1559270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126778 | 1e-126 | AC126778.9 Medicago truncatula clone mth2-32j21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339147.1 | 0.0 | calmodulin-binding transcription activator 5-like isoform X2 | ||||
Refseq | XP_027339148.1 | 0.0 | calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A396JD54 | 0.0 | A0A396JD54_MEDTR; Putative transcription factor CG1-CAMTA family | ||||
TrEMBL | G7IMU6 | 0.0 | G7IMU6_MEDTR; Calmodulin-binding transcription activator | ||||
STRING | AES65041 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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