PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1318430.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 132aa    MW: 15412 Da    PI: 5.0621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1318430.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000597295223
                     EETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                     kC+ C+ sF ++ +++ H +t  H
  Lj6g3v1318430.1 72 KCNTCNVSFEDSKLYREHHKTdwH 95
                     7******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-666116No hitNo description
PROSITE patternPS0002807395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDKMHGRFEV LAHSLYVEGD TQVDQYNDDE DMHAPLSKET SESVLELNDK LQKQTISSTS  60
KPAEGQQSKQ NKCNTCNVSF EDSKLYREHH KTDWHKHNMK RKTRQLPPLT EEECMEDMEL  120
GDSKSDLKDY SF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.57761e-172flower| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1318430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061400.0AP006140.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT37A01, TM0244, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437605.12e-79PREDICTED: ribosome maturation protein SBDS
RefseqXP_027332409.12e-79ribosome maturation protein SBDS-like isoform X1
RefseqXP_027332410.18e-80ribosome maturation protein SBDS-like isoform X2
TrEMBLI3SB342e-88I3SB34_LOTJA; Uncharacterized protein
STRINGXP_004512947.14e-76(Cicer arietinum)