PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1318350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 143aa    MW: 15786.3 Da    PI: 8.6776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1318350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.31.9e-12484184
             GRAS  1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84
                     l++lL+ c  av+++d ++a++lL++++++ +  +d +qRla+ f+ +L+ +la+ +s+++k + +++t     ++ l+a++lf
  Lj6g3v1318350.1  4 LRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQICKGIVSKRTL---AADILKAYNLF 84
                     6899**********************************************************99988887...78888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.4041143IPR005202Transcription factor GRAS
PfamPF035146.6E-10484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MIDLRSLLVL CELAVAADDY RNAHELLKKI RHHLNAFADG NQRLAHIFAD GLEGQLAGPG  60
SQICKGIVSK RTLAADILKA YNLFLPAKTG GPPKLQITGI DFPQPGFMSA QRVILTVHFP  120
VFYAEAYYVS FEYNAIAKKQ ETV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1318350.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061401e-144AP006140.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT37A01, TM0244, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019465132.16e-55PREDICTED: scarecrow-like protein 9
RefseqXP_019465138.16e-55PREDICTED: scarecrow-like protein 9
RefseqXP_019465147.16e-55PREDICTED: scarecrow-like protein 9
RefseqXP_019465155.16e-55PREDICTED: scarecrow-like protein 9
RefseqXP_019465163.16e-55PREDICTED: scarecrow-like protein 9
SwissprotO809331e-37SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A4P1RSP91e-53A0A4P1RSP9_LUPAN; Uncharacterized protein
STRINGXP_007140522.11e-51(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.16e-40GRAS family protein