PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v1201340.3

Common Name

LjTT2a

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB

Protein Properties

Length: 303aa MW: 34179.3 Da PI: 5.4555

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v1201340.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l d+v+++G g W+ ++ g++R++k+c++rw++yl Lj6g3v1201340.3 14 RGAWTAQEDQILRDYVHLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.8	3.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Lj6g3v1201340.3 67 RGNISRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 788999**************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.944	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.95E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-24	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.989	66	116	IPR017930	Myb domain
SMART	SM00717	6.2E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.47E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGRSPCCSKQ GLNRGAWTAQ EDQILRDYVH LHGQGKWRNL PQSAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLCKRVQDGV 120 DVGDSKTPSS QEKNNHHDQK AKPQSVTPSV FSSSQPKNNN VIRTKASKCS KVLLRDPLLP 180 CPPMQTQSDD FIAKLLEEAE GEPLLSAVAN DFTSGDEDGV LSFDPCGNEK ELSTDLLLDL 240 DIGEICLPEF INSDFSYVCD FSYNTHEDLM LFSENTLVQA QKYLGDETNL VNNCFNEEKD 300 NGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.14286	0.0	floral bud

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v1201340.3

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB300033	0.0	AB300033.2 Lotus japonicus LjTT2a mRNA for R2R3-MYB transcription factor LjTT2a, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541301.1	2e-99	transcription factor MYB23
Refseq	XP_028197056.1	2e-99	transcription factor MYB23-like
Swissprot	P10290	7e-62	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	B1B3F2	0.0	B1B3F2_LOTJA; R2R3-MYB transcription factor LjTT2a
STRING	GLYMA13G16890.1	8e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	7e-64	MYB family protein

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Yoshida K, et al. Functional differentiation of Lotus japonicus TT2s, R2R3-MYB transcription factors comprising a multigene family. Plant Cell Physiol., 2008. 49(2): p. 157-69 [PMID:18202001] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]